Browse Element(s) Details


Os.50530.1.S1_at

Description gb:AK121643.1
DB_XREF= gi:37991266
TID=Os.50530.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50530 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033056A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033056A08, full insert sequence.
FL= gb:AK121643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g482209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein
LOC_Os02g48200Os.55056.1.A1_at11/112+29509795..29512887Protein kinase domain containing protein, expressed
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified
LOC_Os02g48270OsAffx.2997.1.S1_at11/112+29538831..29539591LOB domain protein 3, putative
LOC_Os02g48280OsAffx.12548.1.S1_at11/112+29542503..29542955expressed protein
LOC_Os02g48290Os.9374.1.S1_at11/112+29545079..29548378Thioredoxin reductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50530.1.S1_at--437--4271Chr02:29518588..29518612 (25 bp)
CCGGCCGATCGGTATGACGAGAGAT
LOC_Os02g48220
Os.50530.1.S1_at--332--8931Chr02:29518574..29518598 (25 bp)
TGACGAGAGATTAGCCCGTTCCTTC
LOC_Os02g48220
Os.50530.1.S1_at--1089--4532Chr02:29518561..29518585 (25 bp)
GCCCGTTCCTTCTGCACAGAGACAA
LOC_Os02g48220
Os.50530.1.S1_at--497--6052Chr02:29518199..29518222 (24 bp)
GAGATTATACAGTGACATGCCGAGC
LOC_Os02g48220
Os.50530.1.S1_at--740--5011Chr02:29518045..29518065 (21 bp)
GCAGTTGCGGGTTAGCCCGTTTCCT
LOC_Os02g48220
Os.50530.1.S1_at--949--4191NONE
CCCGTTTCCTTCTGCACAGAGACAA
NONE
Os.50530.1.S1_at--1029--8012Chr02:29518475..29518499 (25 bp)
GGAGGTAATAGCCATTCGCCTGCAG
LOC_Os02g48220
Os.50530.1.S1_at--1024--91NONE
ATTCGCCTGCAGATTATACAGTGAC
NONE
Os.50530.1.S1_at--850--3432Chr02:29518199..29518223 (25 bp)
CAGATTATACAGTGACATGCCGAGC
LOC_Os02g48220
Os.50530.1.S1_at--1017--3431Chr02:29517506..29517530 (25 bp)
CAGTTGCGGGTTAGTTGGATCAGTA
LOC_Os02g48220
Os.50530.1.S1_at--284--9411Chr02:29517487..29517511 (25 bp)
TCAGTAGGAAGGTCAGAGAGTTTCT
LOC_Os02g48220
Target Sequence 
CCGGCCGATCGGTATGACGAGAGATTAGCCCGTTCCTTCTGCACAGAGACAAAAACATCACTGGAGCCACACCAGCACAT
GTTCTAACCTTCAGGATTCCAATTTTTTTAATGTGGAGATTATACAGTGACATGCCGAGCAACAAACCGGCCTACTATTT
TTCTTCTTTCCGGATGGAGTCACGATCGCTGTTGCACGGACATTTTGTCTATGACGCGGTAAGAGGGAGGGAAAAAAAAC
AGTACATATTATGGACGTTTGCGTTGCAGCCTTGCAGTTGCGGGTTAGCCCGTTTCCTTCTGCACAGAGACAAAAACATC
ACTGGAGCCACACCAGCACATGTTCTAACCTTCAGGATTCCAATTTTTTAATGTGGAGGTAATAGCCATTCGCCTGCAGA
TTATACAGTGACATGCCGAGCAACAAACCGGCCTACTATTTTTCTTCTTTCCGGATGGAGTCACGATCGCTGTTGCACGG
ACATTTTGTCTATGACGCGGTAAGAGGGAGGGAAAAAAAACAGTACATATTATGGACGTTTGCGTTGCAGCCTTGCAGTT
GCGGGTTAGTTGGATCAGTAGGAAGGTCAGAGAGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis