Browse Element(s) Details


Os.50538.1.S1_at

Description gb:AK121688.1
DB_XREF= gi:37991311
TID=Os.50538.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071A03, full insert sequence.
FL= gb:AK121688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g520202/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51990NANA4+30650588..30652665Transferase family protein, expressed
LOC_Os04g52000Os.11204.1.S1_at11/114+30656143..30660431Protein phosphatase 2C containing protein, expressed
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50538.1.S1_at--861--6251Chr11:15298005..15298031 (25 bp)
GATTTCATACAACACTTAACTTCTA
NONE
Os.50538.1.S1_at--381--9092Chr11:15297940..15297964 (25 bp)
TGCTGTTATAATCTGGACCCACCAT
NONE
Os.50538.1.S1_at--586--3052Chr11:15297931..15297955 (25 bp)
AATCTGGACCCACCATGATCTAATG
NONE
Os.50538.1.S1_at--205--7491Chr11:15297876..15297900 (25 bp)
GTGGGAATTTCTAGTCTCTACAATG
NONE
Os.50538.1.S1_at--60--9851Chr11:15297858..15297882 (25 bp)
TACAATGAACGTAGTGCCTTCTTTC
NONE
Os.50538.1.S1_at--222--7291Chr11:15297845..15297869 (25 bp)
GTGCCTTCTTTCAAGCTTGTTTTAA
NONE
Os.50538.1.S1_at--469--10831Chr11:15297691..15297715 (25 bp)
TTGTGTGCCTAAATTGTATGATCCA
NONE
Os.50538.1.S1_at--666--131Chr11:15297664..15297688 (25 bp)
ATTCACTTCTATGGTGTTTCAGTCA
NONE
Os.50538.1.S1_at--300--591Chr11:15297636..15297660 (25 bp)
ATGCCTATAACACCTACATCAAGTT
NONE
Os.50538.1.S1_at--402--5051Chr11:15297594..15297618 (25 bp)
GCAGACTAGCTTACTGAGTGACCAG
NONE
Os.50538.1.S1_at--520--5351Chr11:15297570..15297594 (25 bp)
GAAGATCTGCTGTACCTTGTGTGTA
NONE
Target Sequence 
GATTTCATACAACACTTAACTTCTATTATAACTGTATTTTATATACAAATATATCAATCAATCTATGCTGTTATAATCTG
GACCCACCATGATCTAATGGTAAAATGTTTTTCTTTTTTTATGATTAATGTGGGAATTTCTAGTCTCTACAATGAACGTA
GTGCCTTCTTTCAAGCTTGTTTTAATGATATAATAGATTTTAAGGAACAAGTTTTACTGGAAGAAGGATAATAAACATGT
TCTAACTTGTGAGTAAAAGAATGTGCAACTAGAATGTTGTTGACTATCAGTAAATGTAATAGCAGGTAGTATTTTTGTGT
GCCTAAATTGTATGATCCAATATTCACTTCTATGGTGTTTCAGTCAAAAATGCCTATAACACCTACATCAAGTTTGTGAA
ATATAATGAGAGCAGACTAGCTTACTGAGTGACCAGAAGATCTGCTGTACCTTGTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis