Browse Element(s) Details


Os.50555.1.S1_at

Description gb:AK102340.1
DB_XREF= gi:32987549
TID=Os.50555.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091B04, full insert sequence.
FL= gb:AK102340.1 gb:AK121819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0386011/11D-mannose binding lectin family protein, expressed
LOC_Os12g036707/11D-mannose binding lectin family protein
LOC_Os11g038401/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03830Os.46785.2.S1_x_at5/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.30226.2.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.442.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830Os.13704.1.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03830OsAffx.21756.3.S1_x_at1/1111+1513933..1520408retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03840Os.50555.1.S1_at1/1111+1521292..1523817D-mannose binding lectin family protein
LOC_Os11g03850NANA11+1533949..1534785pentatricopeptide, putative
LOC_Os11g03860Os.50555.1.S2_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03860Os.50555.1.S1_at11/1111+1537545..1540255D-mannose binding lectin family protein, expressed
LOC_Os11g03870OsAffx.18656.1.S1_at11/1111+1542513..1542918hypothetical protein
LOC_Os11g03880OsAffx.31567.1.S1_at11/1111+1545093..1547579D-mannose binding lectin family protein
LOC_Os11g03890Os.22510.1.A1_at9/1111+1550992..1553325heterogeneous nuclear ribonucleoprotein, putative, expressed
LOC_Os11g03900Os.18609.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03900Os.50822.1.S1_at11/1111+1553678..1558820glucosamine-fructose-6-phosphate aminotransferase, isomerizing family protein, expressed
LOC_Os11g03910Os.24473.1.A1_s_at11/1111+1561203..1564094zinc finger family protein, putative, expressed
LOC_Os11g03920OsAffx.18657.3.S1_s_at11/1111+1564342..1565323expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50555.1.S1_at--746--9311Chr11:1538858..1538882 (25 bp)
TCCCGGCTGATCTTGACATGCTAGA
LOC_Os11g03860
Os.50555.1.S1_at--779--2151Chr11:1538909..1538933 (25 bp)
ACAGCGATGGTCACGGCATTGCCGC
LOC_Os11g03860
Os.50555.1.S1_at--837--2751Chr11:1538942..1538966 (25 bp)
AAGACATCGTCGGATGCGGTGGCAT
LOC_Os11g03860
Os.50555.1.S1_at--790--8033Chr11:1538976..1539000 (25 bp)
GGAGTTCTTGCTCAATGTCTCGAAT
LOC_Os11g03860
Os.50555.1.S1_at--225--7212Chr11:1539030..1539054 (25 bp)
GTCGATATGGTTCTACTTCTACGGA
LOC_Os11g03860
Os.50555.1.S1_at--468--2052Chr11:1539044..1539068 (25 bp)
ACTTCTACGGATTTCTGACTGCATT
LOC_Os11g03860
Os.50555.1.S1_at--831--8832Chr11:1539089..1539113 (25 bp)
TGATAGCATTCGGTTGCTGGCTCTT
LOC_Os11g03860
Os.50555.1.S1_at--1000--10692Chr11:1539102..1539126 (25 bp)
TTGCTGGCTCTTTTCCAACAAGGGA
LOC_Os11g03860
Os.50555.1.S1_at--535--2652Chr11:1539133..1539157 (25 bp)
AAGCCATGTCAGGTTTCAGCACTAG
LOC_Os11g03860
Os.50555.1.S1_at--601--10391Chr11:1539186..1539210 (25 bp)
TTTTCGCACATATAGCTACGCAGAG
LOC_Os11g03860
Os.50555.1.S1_at--408--8812Chr11:1539295..1539319 (25 bp)
TGTTCCAGGCTGAGTTGAGTGTTAT
LOC_Os11g03860
Target Sequence 
TCCCGGCTGATCTTGACATGCTAGAAATACACATCCACCAATGGCAAGCAGACAGCGATGGTCACGGCATTGCCGCCATT
CAGGAAGACATCGTCGGATGCGGTGGCATGAGCTCACCGGAGTTCTTGCTCAATGTCTCGAATGCGTCATCGAGCAAAAG
TAATCAGGGCAAGTCGATATGGTTCTACTTCTACGGATTTCTGACTGCATTTTTTGTCATTGAAGTGTTTGTGATAGCAT
TCGGTTGCTGGCTCTTTTCCAACAAGGGAGTTTTTAAGCCATGTCAGGTTTCAGCACTAGNTGAAGGGTACAGGATGGTT
ACCAACCATTTTCGCACATATAGCTACGCAGAGCTACAGAAGGGAACTAGAAAGTTTCAGAGTGAGATCGGCCGTGGTGG
GTCAAGGTGCTACAAGATGTGAAGCAAAGTGAGGATGTGTTCCAGGCTGAGTTGAGTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis