Browse Element(s) Details


Os.50580.1.S1_at

Description gb:AK064073.1
DB_XREF= gi:32974091
TID=Os.50580.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50580 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H01, full insert sequence.
FL= gb:AK064073.1 gb:AK121934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4440011/11ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44340Os.17549.1.S1_at11/114+26038901..26040701expressed protein
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008236molecular_functionserine-type peptidase activity
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50580.1.S1_at--534--8051Chr04:26066316..26066340 (25 bp)
GGAGATCCTCAAGGTGCGCGACCGT
LOC_Os04g44400
Os.50580.1.S1_at--1085--7151Chr04:26066339..26066363 (25 bp)
GTCTCAACAAGATCTACGCCAAGCA
LOC_Os04g44400
Os.50580.1.S1_at--1149--871Chr04:26066372..26066396 (25 bp)
AGGCCATCGACCGTATCGAGCAGTG
LOC_Os04g44400
Os.50580.1.S1_at--186--831Chr04:26066416..26066440 (25 bp)
ATGGATCCAGAGGAGGCGCACGACT
LOC_Os04g44400
Os.50580.1.S1_at--354--1211Chr04:26066475..26066499 (25 bp)
AGTTTCACTGGTTTCTGATGCCGTC
LOC_Os04g44400
Os.50580.1.S1_at--735--5071Chr04:26066501..26066525 (25 bp)
GCAGCGATCTGCCAAACCTAGGCGG
LOC_Os04g44400
Os.50580.1.S1_at--1152--6311Chr04:26066554..26066578 (25 bp)
GATGAACCATCTCCAGCTTGATGAA
LOC_Os04g44400
Os.50580.1.S1_at--502--2271Chr04:26066593..26066617 (25 bp)
AAATCTTTTTGCGTTCCTGTAGCTG
LOC_Os04g44400
Os.50580.1.S1_at--890--7871Chr04:26066633..26066657 (25 bp)
GGTTTAATTCTTGCACAGCCTGTTC
LOC_Os04g44400
Os.50580.1.S1_at--76--5131Chr04:26066645..26066669 (25 bp)
GCACAGCCTGTTCTTTTGGTACTTG
LOC_Os04g44400
Os.50580.1.S1_at--182--9771Chr04:26066687..26066711 (25 bp)
TAATGAATTCAACCCTTGCCTGCTT
LOC_Os04g44400
Target Sequence 
GGAGATCCTCAAGGTGCGCGACCGTCTCAACAAGATCTACGCCAAGCACACGAGCCAGGCCATCGACCGTATCGAGCAGT
GCATGGAGCGGGACATGTTCATGGATCCAGAGGAGGCGCACGACTGGGGGCTCATCGACGAGGTCATCGAGCACCGCCCA
GTTTCACTGGTTTCTGATGCCGTCGGCAGCGATCTGCCAAACCTAGGCGGGGGCGGAGATGGGGCTAACAAGGCAACTGA
TGAACCATCTCCAGCTTGATGAATGGTCACAAGGTGCAAATCTTTTTGCGTTCCTGTAGCTGTGTTGCTGGAATTAAGGT
TTAATTCTTGCACAGCCTGTTCTTTTGGTACTTGAATTAATCTGTTTCTTATAATGAATTCAACCCTTGCCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis