Browse Element(s) Details


Os.50607.1.S1_at

Description gb:AK122058.1
DB_XREF= gi:37991704
TID=Os.50607.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114N01, full insert sequence.
FL= gb:AK122058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0547011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05440OsAffx.10693.1.S1_at1/118+2872609..2884290NB-ARC domain containing protein
LOC_Os08g05450Os.35344.3.S1_x_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_s_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450Os.35344.18.S1_x_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.1.S1_s_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.3.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_at8/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.31552.2.S1_at1/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05460OsAffx.5716.1.S1_at11/118+2898272..2900951F-box domain containing protein
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05480Os.56230.1.S1_at11/118+2912328..2914937F-box domain containing protein, expressed
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05510OsAffx.27508.78.S1_s_at11/118+2928448..2933764myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50607.1.S1_at--837--1651Chr08:2904024..2904048 (25 bp)
AGCGCGCTGATTTACTTGCTTCGTT
LOC_Os08g05470
Os.50607.1.S1_at--624--9071Chr08:2904008..2904032 (25 bp)
TGCTTCGTTGCTCACCAATCATAGA
LOC_Os08g05470
Os.50607.1.S1_at--991--10071Chr08:2903609..2903709 (25 bp)
TTTCGACTAGGTAGGTTCGGCACTT
LOC_Os08g05470
Os.50607.1.S1_at--1082--8251Chr08:2903577..2903601 (25 bp)
GGCAGATGTACGAGCATGGTCCTCT
LOC_Os08g05470
Os.50607.1.S1_at--180--5011Chr08:2903564..2903588 (25 bp)
GCATGGTCCTCTGATCAGTGATTAG
LOC_Os08g05470
Os.50607.1.S1_at--19--9631Chr08:2903535..2903559 (25 bp)
TCATGATCGGCAACCCATGTTCAGT
LOC_Os08g05470
Os.50607.1.S1_at--939--6051Chr08:2903486..2903510 (25 bp)
GAGTTGCTGTGGGTCATACTGCTCT
LOC_Os08g05470
Os.50607.1.S1_at--53--5591Chr08:2903440..2903464 (25 bp)
GAAATCCTTTTTACTACTGCTGTTC
LOC_Os08g05470
Os.50607.1.S1_at--154--1991Chr08:2903425..2903449 (25 bp)
ACTGCTGTTCTTCCACTTGAAACTT
LOC_Os08g05470
Os.50607.1.S1_at--31--411Chr08:2903394..2903418 (25 bp)
ATCAGCATCATCATGGTACTTGTTA
LOC_Os08g05470
Os.50607.1.S1_at--20--2411Chr08:2903300..2903324 (25 bp)
AAACTTGGCCGTGGAGAGTGCTCTT
LOC_Os08g05470
Target Sequence 
AGCGCGCTGATTTACTTGCTTCGTTGCTCACCAATCATAGAGAAACTCACTCTGCATCTTGGAATGATTGAAGGTTTGGC
TTGGGAACAGTGGATGAGTTACCCACAAGAAGAGACGCCAGACCTGTCGTTCAGTTGTGAGCGTCTTAAGAAGGTCAAAA
TCATCTGTGTGCAGGACGACAAAAGGGTGCCTGCTATAGTTAATGCTATACTTGCCAATGCGAACTCTCTGCCAGAAATT
GTTATCAAACCGTACAAGCGTTTCGACTAGGTAGGTTCGGCACTTGGGCTCGGGCAGATGTACGAGCATGGTCCTCTGAT
CAGTGATTAGATCCTCATGATCGGCAACCCATGTTCAGTTTGTAGTTTATATGTTAAAGATGAGAGTTGCTGTGGGTCAT
ACTGCTCTGCCCAGTACCAAATCTTCCTGGAAATCCTTTTTACTACTGCTGTTCTTCCACTTGAAACTTTTATCCATCAG
CATCATCATGGTACTTGTTATTTGTTTTGTGTTTGAAGACTGAAGTCTAAGCAAGTCATGTATCTTTTGACATTTTTCAC
CCCAAAATTAAACTTGGCCGTGGAGAGTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis