Browse Element(s) Details


Os.50611.1.S1_x_at

Description gb:AK122077.1
DB_XREF= gi:37991723
TID=Os.50611.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119E05, full insert sequence.
FL= gb:AK122077.1 gb:AK064029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1289011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed
LOC_Os02g12910NANA2+6815291..6818362Leucine Rich Repeat family protein, expressed
LOC_Os02g12919NANA2+6822933..6823169NA
LOC_Os02g12930OsAffx.12012.1.S1_at11/112+6826610..6827182hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0009934biological_processregulation of meristem organization
GO:0010223biological_processsecondary shoot formation
GO:0016117biological_processcarotenoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50611.1.S1_x_at--482--7631Chr02:6803678..6803702 (25 bp)
GGGAGACCTCCGAGCCCGTCGAGAT
LOC_Os02g12890
Os.50611.1.S1_x_at--446--6991Chr02:6803106..6803130 (25 bp)
GTACGCGCACATCCCGTTCGGGATC
LOC_Os02g12890
Os.50611.1.S1_x_at--193--2131Chr02:6803059..6803083 (25 bp)
ACAGGTTCGCGCTGCAGCAGGTGAA
LOC_Os02g12890
Os.50611.1.S1_x_at--1093--10651Chr02:6802940..6802964 (25 bp)
TTCCGCCATGGCGTCAAGCTCAGGG
LOC_Os02g12890
Os.50611.1.S1_x_at--904--2691Chr02:6802925..6802949 (25 bp)
AAGCTCAGGGCCATCAAGAGGACCA
LOC_Os02g12890
Os.50611.1.S1_x_at--219--9731Chr02:6802912..6802936 (25 bp)
TCAAGAGGACCAACACCTGAGCTCA
LOC_Os02g12890
Os.50611.1.S1_x_at--917--1671Chr02:6802883..6802907 (25 bp)
AGCCTGAGCCTAGCACTGTGTGAAG
LOC_Os02g12890
Os.50611.1.S1_x_at--371--1191Chr02:6802849..6802873 (25 bp)
AGTATATGTGTGTTGCTAATCTGCT
LOC_Os02g12890
Os.50611.1.S1_x_at--1059--3051Chr02:6802832..6802856 (25 bp)
AATCTGCTAGTGGTGTGTTTGCTAA
LOC_Os02g12890
Os.50611.1.S1_x_at--876--1491Chr02:6802804..6802828 (25 bp)
AGCAAATTGCAAATCTGGCTAGTTT
LOC_Os02g12890
Os.50611.1.S1_x_at--743--3051Chr02:6802793..6802817 (25 bp)
AATCTGGCTAGTTTGTATTTTCAAG
LOC_Os02g12890
Target Sequence 
GGGAGACCTCCGAGCCCGTCGAGATCGCCGGCCACCTCCTCCCAAAGGGGACGTACGTGTGGCTGGCGCCGGGGGTGTTG
GCGAGGGACGCGGCGCAGTTCCCGGAGCCGGAGGAGTTCAGGCCGGAGAGGTTCGCGGCGGGGGCGGCGGAGGNGAGGGC
GAGGCACCCGTACGCGCACATCCCGTTCGGGATCGGGCCACGGGCGTGCGTGGGGCACAGGTTCGCGCTGCAGCAGGTGA
AGCTCGCCGCCGTCGGCCTCTACCGCCGCTACGTGTTCCGCCACTCGCCGGCGATGGAGTCGCCCCTCCAGTTCGACTTC
GACCTCGTCCTCGCCTTCCGCCATGGCGTCAAGCTCAGGGCCATCAAGAGGACCAACACCTGAGCTCACCTCAGCCTGAG
CCTAGCACTGTGTGAAGTATGTGTANAGTATATGTGTGTTGCTAATCTGCTAGTGGTGTGTTTGCTAAGAGAGCAAATTG
CAAATCTGGCTAGTTTGTATTTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50611.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis