Browse Element(s) Details


Os.50620.1.S1_at

Description gb:AK122160.1
DB_XREF= gi:37991806
TID=Os.50620.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147F11, full insert sequence.
FL= gb:AK122160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4419011/11ATPase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50620.1.S1_at--943--5011Chr12:27379319..27379343 (25 bp)
GCAGGTCTGATCGAGGCGTTGAACA
LOC_Os12g44190
Os.50620.1.S1_at--168--2471Chr12:27379136..27379160 (25 bp)
AACAACAAGTCGAATGGCACCATAT
LOC_Os12g44190
Os.50620.1.S1_at--1109--5091Chr12:27378982..27379006 (25 bp)
GCACGAGGAGTTGTTCGTCCTGGAC
LOC_Os12g44190
Os.50620.1.S1_at--844--9271Chr12:27378965..27378989 (25 bp)
TCCTGGACGATCGACGGGACCATAT
LOC_Os12g44190
Os.50620.1.S1_at--708--8571Chr12:27378919..27378943 (25 bp)
TGGTTTTCAGTCTTCTTCATGCATA
LOC_Os12g44190
Os.50620.1.S1_at--154--651Chr12:27378901..27378925 (25 bp)
ATGCATATGACATGGCACTTCACTA
LOC_Os12g44190
Os.50620.1.S1_at--589--1151Chr12:27378870..27378894 (25 bp)
AGTCTTCTCCTATGTCTTAATTGTT
LOC_Os12g44190
Os.50620.1.S1_at--201--8971Chr12:27378805..27378829 (25 bp)
TAAGGTTCCCCATCTTTGTAATAAT
LOC_Os12g44190
Os.50620.1.S1_at--831--7591Chr12:27378778..27378802 (25 bp)
GGGCATAAGGCATATACACCTTCAA
LOC_Os12g44190
Os.50620.1.S1_at--961--1731Chr12:27378761..27378785 (25 bp)
ACCTTCAAGTGTAAATGCCGCCGCT
LOC_Os12g44190
Os.50620.1.S1_at--1035--4151Chr12:27378743..27378767 (25 bp)
CGCCGCTCTGATCATTGTTTCTAAA
LOC_Os12g44190
Target Sequence 
GCAGGTCTGATCGAGGCGTTGAACAAGGCCAAGGTGGAGGCGGCGGAGGCGGCCAAGGCGAAAGAGGAAGAAGAGGCGGC
GGCGGCCAAGGCGAAGGAGGAAGAAGAGGCGGCGAAGGCCAAAGCGGCGAAAGAGAAAGAGAAGGATGACGAAGCTGCAG
GGACGAAGGTGGATGAAACAGTCAACAACAAGTCGAATGGCACCATATAATTTATTAACAAGCTAGGCTAGTAATTAATT
AAGCACGAGGAGTTGTTCGTCCTGGACGATCGACGGGACCATATATGTCAGGACAGAGCGAGGAGTGGTTTTCAGTCTTC
TTCATGCATATGACATGGCACTTCACTAATATATAGTCTTCTCCTATGTCTTAATTGTTTGAGTCCTTATATATTTTTGT
CATAGTTTCTTTCTATTAATAAGGTTCCCCATCTTTGTAATAATAAGGGCATAAGGCATATACACCTTCAAGTGTAAATG
CCGCCGCTCTGATCATTGTTTCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis