Browse Element(s) Details


Os.50633.1.S1_at

Description gb:NM_184882.1
DB_XREF= gi:34896853
GEN=OSJNBa0067E01.14
TID=Os.50633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50633 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ankyrin (OSJNBa0067E01.14), mRNA.
PROD=putative ankyrin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4764010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47610Os.18490.3.S1_at7/113+26901226..26906905Thiamine biosynthesis protein thiC, putative, expressed
LOC_Os03g47614Os.33602.1.S1_at7/113+26910065..26910663hypothetical protein
LOC_Os03g47620Os.45041.1.S1_x_at11/113+26911878..26919392TPR Domain containing protein
LOC_Os03g47629NANA3+26920979..26921203hypothetical protein
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein
LOC_Os03g47650OsAffx.22672.1.S1_at10/113+26937495..26944710TPR Domain containing protein, expressed
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50633.1.S1_at--658--7711Chr03:26933453..26933477 (25 bp)
GGGTGCAATCATATTCTACACTGAG
LOC_Os03g47640
Os.50633.1.S1_at--770--9531NONE
TCTACACTGAGTTTTTATGCAAATA
NONE
Os.50633.1.S1_at--277--191Chr03:26934093..26934117 (25 bp)
ATTTCTTCAATAATCCAAGCCCGAA
LOC_Os03g47640
Os.50633.1.S1_at--426--10011Chr03:26934135..26934159 (25 bp)
TAGCACAAAAGAACCCAACTCCACA
LOC_Os03g47640
Os.50633.1.S1_at--759--3291Chr03:26934156..26934180 (25 bp)
CACACATACCACATCGCAGAAGCAT
LOC_Os03g47640
Os.50633.1.S1_at--1035--1431Chr03:26934173..26934197 (25 bp)
AGAAGCATGGCAGTCTCTGCATCCC
LOC_Os03g47640
Os.50633.1.S1_at--1105--9471Chr03:26934188..26934212 (25 bp)
TCTGCATCCCAGTTGACATCTAGGA
LOC_Os03g47640
Os.50633.1.S1_at--651--7951Chr03:26934210..26934234 (25 bp)
GGATACTATTATCACTTCTATTGTC
LOC_Os03g47640
Os.50633.1.S1_at--564--7151Chr03:26934232..26934256 (25 bp)
GTCTAGGAACTATTGCTGTGTTAAC
LOC_Os03g47640
Os.50633.1.S1_at--1160--5691Chr03:26934264..26934288 (25 bp)
GACTCAGTTTGAATTTCCAATGGCA
LOC_Os03g47640
Os.50633.1.S1_at--817--7651Chr03:26934303..26934636 (25 bp)
GGGATACACTTGCAATGAAACTTGA
LOC_Os03g47640
Target Sequence 
GGGTGCAATCATATTCTACACTGAGTTTTTATGCAAATATAATTTCTTCAATAATCCAAGCCCGAACTATAAACAACAGA
GATTAGCACAAAAGAACCCAACTCCACACATACCACATCGCAGAAGCATGGCAGTCTCTGCATCCCAGTTGACATCTAGG
ATACTATTATCACTTCTATTGTCTAGGAACTATTGCTGTGTTAACAAAGGAAGACTCAGTTTGAATTTCCAATGGCATTG
CCATCATGTGGGGGATACACTTGCAATGAAACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis