Browse Element(s) Details


Os.50640.1.S1_at

Description gb:AK072276.1
DB_XREF= gi:32982299
TID=Os.50640.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010O04, full insert sequence.
FL= gb:AK072276.1 gb:AY340072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3374010/11Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os04g33700OsAffx.26311.1.S1_at11/114+20218550..20223018ABC transporter transmembrane region family protein, expressed
LOC_Os04g33710Os.7509.1.S1_at11/114+20223788..20224534expressed protein
LOC_Os04g33720Os.50337.1.S1_at11/114+20224928..20227854Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os04g33730OsAffx.14116.1.S1_at11/114+20230880..20231943hypothetical protein
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed
LOC_Os04g33760Os.53796.1.S1_at11/114+20255902..20257262expressed protein
LOC_Os04g33770OsAffx.26312.1.S1_at11/114+20259479..20265096hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50640.1.S1_at--229--2851NONE
AAGTCATCGCGCAACCCGAACATGT
NONE
Os.50640.1.S1_at--550--4111Chr04:20238743..20238767 (25 bp)
CGAACATGTACCAGCCGACGTTTGC
LOC_Os04g33740
Os.50640.1.S1_at--895--5751Chr04:20238759..20238783 (25 bp)
GACGTTTGCAGGGTTCGTTGACACG
LOC_Os04g33740
Os.50640.1.S1_at--716--10751Chr04:20238776..20238800 (25 bp)
TTGACACGGACATCACCAACGGGAA
LOC_Os04g33740
Os.50640.1.S1_at--464--251Chr04:20238802..20239112 (25 bp)
ATATCTCTGAGGAGCCTGATCGACA
LOC_Os04g33740
Os.50640.1.S1_at--143--9371Chr04:20239107..20239131 (25 bp)
TCGACAGGTCGGTTGTTGAGAGCTT
LOC_Os04g33740
Os.50640.1.S1_at--800--5431Chr04:20239192..20239216 (25 bp)
GAACGCGCGCCTTTACGTTTTCAAT
LOC_Os04g33740
Os.50640.1.S1_at--516--5971Chr04:20239335..20239359 (25 bp)
GAGAACTACCTTCAGTAGCTAGCTA
LOC_Os04g33740
Os.50640.1.S1_at--324--1971Chr04:20239389..20239413 (25 bp)
ACTGATTGCCCTTAATTATGTGCTA
LOC_Os04g33740
Os.50640.1.S1_at--805--2291Chr04:20239433..20239457 (25 bp)
AAATGGTTTCAGTCACACGTGTCGT
LOC_Os04g33740
Os.50640.1.S1_at--714--3331Chr04:20239448..20239472 (25 bp)
CACGTGTCGTATGCATATGTACCAA
LOC_Os04g33740
Target Sequence 
AAGTCATCGCGCAACCCGAACATGTACCAGCCGACGTTTGCAGGGTTCGTTGACACGGACATCACCAACGGGAAGATATC
TCTGAGGAGCCTGATCGACAGGTCGGTTGTTGAGAGCTTCGGGGCTGGAGGAAAGGCGTGCATCCTGTCGAGGGTGTACC
CGTCGCTGGCCATCGGCAAGAACGCGCGCCTTTACGTTTTCAATAACGGGAAGGCGGAGATCAAGGTGTCGCAGCTCACC
GCGTGGGAGATGAAGAAGCCGGTCATGATGAATGGAGCCTAAACAATATTTGAAATTGAGAGAGATAGATGCAATGCATG
ATGAGAACTACCTTCAGTAGCTAGCTAGATTTTTGAGTTTCAGCGGAAAAGAAAAAACTGATTGCCCTTAATTATGTGCT
AAATCATGCCCCCTTGTGTAAAATGGTTTCAGTCACACGTGTCGTATGCATATGTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis