Browse Element(s) Details


Os.50671.1.S1_x_at

Description gb:AJ490444.1
DB_XREF= gi:27527364
TID=Os.50671.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50671 (NCBI UniGene Cluster)
UG_TITLE=Z194b snoRNA
DEF=Oryza sativa z194b snoRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3818011/11Heat shock cognate 70 kDa protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38130NANA12+23384971..23385219hypothetical protein
LOC_Os12g38140Os.11513.1.S1_at11/1112+23386517..23387326expressed protein
LOC_Os12g38150Os.6116.1.S1_x_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38150Os.6116.1.S1_at11/1112+23394201..23395189thaumatin-like cytokinin-binding protein, putative, expressed
LOC_Os12g38160OsAffx.32078.1.S1_at11/1112+23396535..23397786hypothetical protein
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein
LOC_Os12g38200OsAffx.20006.1.S1_at11/1112+23425400..23426830Dof domain, zinc finger family protein, expressed
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50671.1.S1_x_at--1085--4632Chr12:23410993..23411017 (25 bp)
GCGTTTGTTACGCTGATCCATATGA
LOC_Os12g38180
Os.50671.1.S1_x_at--429--4031Chr12:23410994..23411018 (25 bp)
CGTTTGTTACGCTGATCCATATGAT
LOC_Os12g38180
Os.50671.1.S1_x_at--910--6851Chr12:23410995..23411019 (25 bp)
GTTTGTTACGCTGATCCATATGATG
LOC_Os12g38180
Os.50671.1.S1_x_at--890--10251Chr12:23410996..23411020 (25 bp)
TTTGTTACGCTGATCCATATGATGG
LOC_Os12g38180
Os.50671.1.S1_x_at--178--10791Chr12:23410997..23411021 (25 bp)
TTGTTACGCTGATCCATATGATGGA
LOC_Os12g38180
Os.50671.1.S1_x_at--414--8791Chr12:23410998..23411022 (25 bp)
TGTTACGCTGATCCATATGATGGAG
LOC_Os12g38180
Os.50671.1.S1_x_at--781--6771Chr12:23410999..23411023 (25 bp)
GTTACGCTGATCCATATGATGGAGG
LOC_Os12g38180
Os.50671.1.S1_x_at--617--1831Chr12:23411002..23411026 (25 bp)
ACGCTGATCCATATGATGGAGGGCT
LOC_Os12g38180
Os.50671.1.S1_x_at--445--4751Chr12:23411004..23411028 (25 bp)
GCTGATCCATATGATGGAGGGCTAT
LOC_Os12g38180
Os.50671.1.S1_x_at--395--6371Chr12:23411007..23411031 (25 bp)
GATCCATATGATGGAGGGCTATGGT
LOC_Os12g38180
Os.50671.1.S1_x_at--346--4331Chr12:23411010..23411034 (25 bp)
CCATATGATGGAGGGCTATGGTAAC
LOC_Os12g38180
Target Sequence 
GCGTTTGTTACGCTGATCCATATGATGGAGGGCTATGGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50671.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis