Browse Element(s) Details


Os.50750.1.S1_at

Description gb:AK058286.1
DB_XREF= gi:32968304
TID=Os.50750.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E01, full insert sequence.
FL= gb:AK071309.1 gb:AK058286.1 gb:AK104314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0219011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50750.1.S1_at--217--6151Chr03:711388..711412 (25 bp)
GATGGCCGACGTTGTACGGACCCTG
LOC_Os03g02190
Os.50750.1.S1_at--586--7371Chr03:711337..711361 (25 bp)
GTGACGTGCAATGTTGTGCGCCGTA
LOC_Os03g02190
Os.50750.1.S1_at--408--5831Chr03:711281..711305 (25 bp)
GACCGTAGGATTGGATGCTGCTCCC
LOC_Os03g02190
Os.50750.1.S1_at--852--11Chr03:711105..711129 (25 bp)
ATAGTATTTTGGTGGCCGATCCCGA
LOC_Os03g02190
Os.50750.1.S1_at--1033--4491Chr03:711091..711115 (25 bp)
GCCGATCCCGATCATTGTTGTTCAT
LOC_Os03g02190
Os.50750.1.S1_at--759--8811Chr03:711076..711100 (25 bp)
TGTTGTTCATCTTCTACTAGGTCGT
LOC_Os03g02190
Os.50750.1.S1_at--434--10571Chr03:711065..711089 (25 bp)
TTCTACTAGGTCGTTGGCACACAAG
LOC_Os03g02190
Os.50750.1.S1_at--1141--2972Chr04:4337593..4337916 (25 bp)
AATCCACATCCACTGCATGCATATT
NONE
Os.50750.1.S1_at--441--10031Chr03:710980..711004 (25 bp)
TAGATGTTTTTTGCACGCCTTCTTC
LOC_Os03g02190
Os.50750.1.S1_at--554--10511Chr03:710951..710975 (25 bp)
TTCAGCAAGCACCAGCACGTAAAAT
LOC_Os03g02190
Os.50750.1.S1_at--231--751Chr03:710883..710907 (25 bp)
ATGTTTCCAATTCTCTCATTTTCTT
LOC_Os03g02190
Target Sequence 
GATGGCCGACGTTGTACGGACCCTGGAGAAGCCCGCGCAAAAGGCCGGACGGTGACGTGCAATGTTGTGCGCCGTAGGAT
GGTTAGATATGACGTGGCAAGTATCAGGACCGTAGGATTGGATGCTGCTCCCGCGCGTGGAACCCCTTGCCGCGATTGGG
TTGGTGAGGAGCAAGAAAGCAATAGAGACGAAGCGTATCAAAATTCAAAAGCAACCAAGCAAGCAACGATCGAGGGTTTG
GTTCGGACAAGGACTTTTTGGAGGATGTTTGTGCAGTTTTTTCATAGTATTTTGGTGGCCGATCCCGATCATTGTTGTTC
ATCTTCTACTAGGTCGTTGGCACACAAGTGCATGCAGCAACTGTAAGAGAGGATTCAATCCACATCCACTGCATGCATAT
TAAATTTTTAGATGTTTTTTGCACGCCTTCTTCCTGCTTCAGCAAGCACCAGCACGTAAAATAAACGTGCACAAAATCTG
TAAATACATTTGTTCAGAGAATCATATGTTTCCAATTCTCTCATTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis