Browse Element(s) Details


Os.50792.1.S1_x_at

Description gb:AK058598.1
DB_XREF= gi:32968616
TID=Os.50792.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H05, full insert sequence.
FL= gb:AK058598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3340011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed
LOC_Os08g33400Os.50792.1.S1_x_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_s_at11/118+20695407..20698492expressed protein
LOC_Os08g33400OsAffx.17311.1.S1_at8/118+20695407..20698492expressed protein
LOC_Os08g33410OsAffx.17312.1.S1_x_at10/118+20709359..20710315hypothetical protein
LOC_Os08g33410OsAffx.20313.1.S1_x_at3/118+20709359..20710315hypothetical protein
LOC_Os08g33420Os.14960.1.S1_at11/118+20715184..20720165Agenet domain containing protein, expressed
LOC_Os08g33430OsAffx.29489.1.S1_at11/118+20722477..20725372Formin Homology 2 Domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50792.1.S1_x_at--406--9671Chr08:20697848..20697872 (25 bp)
TCACCGTTTCAATGCACCAGAGTTA
LOC_Os08g33400
Os.50792.1.S1_x_at--1106--8051Chr08:20697921..20697945 (25 bp)
GGAGACTGCCATATGTTTCCATCAG
LOC_Os08g33400
Os.50792.1.S1_x_at--120--571Chr08:20697974..20697998 (25 bp)
ATCCAATTTCGACTTGTTACCCTGA
LOC_Os08g33400
Os.50792.1.S1_x_at--802--1511Chr08:20698138..20698162 (25 bp)
AGCAGCTTCCTTGGTCAGATTTTTC
LOC_Os08g33400
Os.50792.1.S1_x_at--1040--3151Chr08:20698173..20698197 (25 bp)
AATTCCATCGCGTTCAGTTTACTGA
LOC_Os08g33400
Os.50792.1.S1_x_at--701--8971Chr08:20698195..20698219 (25 bp)
TGAACTTTCGACTGCTACTTCGGTT
LOC_Os08g33400
Os.50792.1.S1_x_at--664--9871Chr08:20698210..20698234 (25 bp)
TACTTCGGTTCAGGCTTTGTTTCGA
LOC_Os08g33400
Os.50792.1.S1_x_at--326--7331Chr08:20698259..20698283 (25 bp)
GTGCTTGCTTGTTAGGTCGTTCAGA
LOC_Os08g33400
Os.50792.1.S1_x_at--1059--4851Chr08:20698289..20698313 (25 bp)
GCAACTACTGTATCGTCACGTCGGG
LOC_Os08g33400
Os.50792.1.S1_x_at--882--10631Chr08:20698321..20698345 (25 bp)
TTCGCTTGCACCTCAGCTAAGAATG
LOC_Os08g33400
Os.50792.1.S1_x_at--2--711Chr08:20698393..20698417 (25 bp)
ATGAGATTGCAGGTTCTTCGACAGT
LOC_Os08g33400
Target Sequence 
TCACCGTTTCAATGCACCAGAGTTACAGCGGCAGCAAGGAGGCCCCCCCATTGCAATTGAAATGGCCACATGTGGAGACT
GCCATATGTTTCCATCAGAGATGATCTCTCAGTTACAGTAAGACACATCCAATTTCGACTTGTTACCCTGATGAAGGAAC
AAGAAGAAGAGAAAGAAGTGAGTGTGGCAGACAGAGACAGCAGCAACCCGGGCAGACAGCTCCACGCACATTTCACACAA
AAGTCCACACTCCAAACAGCTCCGTGTGCAGCAGCAGCAAGCAGCAGGCCAGCAGCTTCCTTGGTCAGATTTTTCCATCT
CGTCCAATTCCATCGCGTTCAGTTTACTGAACTTTCGACTGCTACTTCGGTTCAGGCTTTGTTTCGACGCCCTATCGGAC
CTTTGACTGACGTGCTTGCTTGTTAGGTCGTTCAGAACACTGCAACTACTGTATCGTCACGTCGGGTTTTCGCTTCGCTT
GCACCTCAGCTAAGAATGATCATAGCTTCATCTGTAGTTACCTAAATTACCGAACTGTAAATTTCATGAGATTGCAGGTT
CTTCGACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50792.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis