Browse Element(s) Details


Os.50803.1.S1_at

Description gb:AK058685.1
DB_XREF= gi:32968703
TID=Os.50803.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A09, full insert sequence.
FL= gb:AK058685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0503011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04980NANA8+2545924..2549774retrotransposon protein, putative, unclassified
LOC_Os08g04990NANA8+2550993..2554852retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g05000NANA8+2557442..2559371retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g05010NANA8+2560311..2561892retrotransposon protein, putative, LINE subclass
LOC_Os08g05020NANA8+2567776..2568576expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030Os.50803.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_x_at9/118+2570243..2575403expressed protein
LOC_Os08g05040OsAffx.29038.1.S1_at11/118+2578493..2579379hypothetical protein
LOC_Os08g05040Os.23271.2.A1_x_at1/118+2578493..2579379hypothetical protein
LOC_Os08g05050OsAffx.16834.1.S1_at11/118+2586317..2586592hypothetical protein
LOC_Os08g05060OsAffx.11392.2.S1_x_at6/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.3.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.25352.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.20408.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.5.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05070OsAffx.5709.1.S1_at10/118+2600123..2603166hypothetical protein
LOC_Os08g05070Os.46444.1.S1_x_at1/118+2600123..2603166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50803.1.S1_at--389--212Chr08:19580127..19580151 (25 bp)
ATATTCATCCACCAGATACTTCCAT
NONE
Os.50803.1.S1_at--993--6472Chr08:19580113..19580137 (25 bp)
GATACTTCCATCACATTGCGCATGT
NONE
Os.50803.1.S1_at--899--4511Chr08:2571717..2571741 (25 bp)
GCGCATGTGCATATCAAGACCAAGA
LOC_Os08g05030
Os.50803.1.S1_at--597--1332Chr08:19580074..19580098 (25 bp)
AGAGGTACCTCATTGCTTGTGGCCT
NONE
Os.50803.1.S1_at--99--8472Chr08:19580055..19580079 (25 bp)
TGGCCTGCTGGTATGGGTGTCTCAC
NONE
Os.50803.1.S1_at--618--7711Chr08:2570386..2570410 (25 bp)
GGGTGACTTAAAAAGGTGCTGCATT
LOC_Os08g05030
Os.50803.1.S1_at--175--9111Chr08:2570370..2570394 (25 bp)
TGCTGCATTGTCACCTAGTAATATG
LOC_Os08g05030
Os.50803.1.S1_at--199--5731Chr08:2570346..2570370 (25 bp)
GACTGACCATGGAGGATATGTGACA
LOC_Os08g05030
Os.50803.1.S1_at--938--5271Chr08:2570313..2570337 (25 bp)
GAATGTGCAATCCTTGTTTAATGAA
LOC_Os08g05030
Os.50803.1.S1_at--560--851Chr08:2570288..2570312 (25 bp)
ATGGCAGTCTTCTAAACCTATATGT
LOC_Os08g05030
Os.50803.1.S1_at--758--5611Chr08:2570262..2570286 (25 bp)
GACAAGCTACTAGCAATAGCTCTAT
LOC_Os08g05030
Target Sequence 
ATATTCATCCACCAGATACTTCCATCACATTGCGCATGTGCATATCAAGACCAAGAGGTACCTCATTGCTTGTGGCCTGC
TGGTATGGGTGTCTCACCCAGGCCAGTGCGGGCGCGATGGCCGCTGTCGAGGTTGGAAATGGCGTGGGTAGACAGGGGCA
CAGGGCACGGCGTTGCAAATAGAGGTCAGGGGCGAGACGGCCGAGAAGATGTGGTGCTCCAATCCAATCATTACGCCGGC
CACCACGCCGTCATCAACTCCGCTCCGTCGCAGCCCGGCGTGGACGCGCCGCCTCTGCCGAGCCCCTCGGTTGAAGTTCA
TAATCTTGTTGACTCATTTAGGGAAAACATTACTTTCCCTGTACAATTCTCTGATGCTTCTAAGTGGGTTGATTGAGGGT
GACTTAAAAAGGTGCTGCATTGTCACCTAGTAATATGACTGACCATGGAGGATATGTGACATTATCGAAGAATGTGCAAT
CCTTGTTTAATGAAATGGCAGTCTTCTAAACCTATATGTTGACAAGCTACTAGCAATAGCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis