Browse Element(s) Details


Os.50833.1.S2_at

Description gb:AK102801.1
DB_XREF= gi:32988010
TID=Os.50833.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108F01, full insert sequence.
FL= gb:AK058863.1 gb:AK102801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1637011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g397502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16350OsAffx.11409.1.S1_at1/117+9547542..9549103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16360OsAffx.31869.3.S1_x_at8/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.3.S1_at7/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.4.S1_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.1.S1_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.4.S1_x_at4/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.31869.5.S1_x_at3/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360Os.48015.1.A1_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360OsAffx.21269.1.S1_x_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16360Os.48015.1.A1_x_at1/117+9555481..9559411retrotransposon protein, putative, unclassified
LOC_Os07g16370Os.50833.1.S2_at11/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16370Os.50833.1.S1_at11/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16370OsAffx.11394.1.S1_at1/117+9566718..9571594transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g16380OsAffx.16295.1.S1_at11/117+9572447..9572866hypothetical protein
LOC_Os07g16389NANA7+9583718..9584079NA
LOC_Os07g16400Os.45173.1.S1_x_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400Os.46610.1.A1_x_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400Os.38751.1.A1_at2/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400OsAffx.28492.1.S1_at1/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16400OsAffx.20877.1.S1_at1/117+9587819..9599662retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50833.1.S2_at--1098--1451Chr07:9567358..9567382 (25 bp)
AGAAGTGTATTCGACACGCTCCGCG
LOC_Os07g16370
Os.50833.1.S2_at--3--9612Chr01:22739481..22739505 (25 bp)
TATTGCTTACGCCAGGATCCGGGCA
LOC_Os01g39750
Os.50833.1.S2_at--365--5091Chr07:9567280..9567304 (25 bp)
GCACGAGTACATGTGGGTTCTACCT
LOC_Os07g16370
Os.50833.1.S2_at--311--3171Chr07:9567098..9567122 (25 bp)
AATTGTTGCCACATGCTTGTTTCGG
LOC_Os07g16370
Os.50833.1.S2_at--408--5511Chr07:9567066..9567090 (25 bp)
GAACAACTCTGTGGATTCATCTTCA
LOC_Os07g16370
Os.50833.1.S2_at--1137--451Chr07:9567033..9567057 (25 bp)
ATCTCGTCAGATGGCGCATACAACA
LOC_Os07g16370
Os.50833.1.S2_at--304--2351Chr07:9567003..9567027 (25 bp)
AAAGCTCCTACTGGGCTAGTGGGTT
LOC_Os07g16370
Os.50833.1.S2_at--70--3711Chr07:9566988..9567012 (25 bp)
CTAGTGGGTTTCATCGAGGCTGGTT
LOC_Os07g16370
Os.50833.1.S2_at--8--8351Chr07:9566971..9566995 (25 bp)
GGCTGGTTGCCCTAGTGACACTTTA
LOC_Os07g16370
Os.50833.1.S2_at--1140--5612Chr01:22739391..22739855 (25 bp)
GACACTTTAGATAGCCGTTCAACAA
LOC_Os01g39750
Os.50833.1.S2_at--208--71Chr07:9566777..9566801 (25 bp)
ATTGCTTCCTTGAACACTTTTCTGT
LOC_Os07g16370
Target Sequence 
AGAAGTGTATTCGACACGCTCCGCGTGCAAATACATTCCGGGTTTGGGCCCACCCTTATTGCTTACGCCAGGATCCGGGC
ACGAGTACATGTGGGTTCTACCTGATGAGATTTATGTCGATTTTCATGGAGGACAACAACTGGAACATTATGGATGCCAA
GAAATTAAAGCTCCCGACAAGTAAATTGTTGCCACATGCTTGTTTCGGCCTCGCTGAACAACTCTGTGGATTCATCTTCA
ATCATATCATCTCGTCAGATGGCGCATACAACATTTCAAAAGCTCCTACTGGGCTAGTGGGTTTCATCGAGGCTGGTTGC
CCTAGTGACACTTTAGATAGCCGTTCAACAACCAAGGAGATGTAGGCTTAGAATAAATATTAGTGGGCAGAACGTACCCT
TTAAACATTTTCTAAGTATCTTGTAGATTAGTTATCTGGATTGATGTGGTTTTCTTAATGTCTTGAACATGAAATTCACT
ATGATGGATTTAATCTGTTTATCTATTGCTTCCTTGAACACTTTTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50833.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis