Browse Element(s) Details


Os.50858.1.S1_at

Description gb:AK059034.1
DB_XREF= gi:32969052
TID=Os.50858.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C07, full insert sequence.
FL= gb:AK059034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g477805/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47760Os.53523.1.A1_at11/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47760Os.52998.1.S1_x_at10/112+29193278..29198438ATPase, AAA family protein, expressed
LOC_Os02g47770OsAffx.24770.1.S1_x_at11/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47770Os.49665.1.S1_at5/112+29200163..29202263ZF-HD protein dimerisation region containing protein, expressed
LOC_Os02g47780Os.50858.1.S1_at5/112+29218349..29220371hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47790OsAffx.24771.1.S1_x_at11/112+29220945..29223212monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800Os.20540.1.S1_at11/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47800OsAffx.24771.1.S1_x_at1/112+29224096..29228326monodehydroascorbate reductase, cytoplasmic isoform 2, putative, expressed
LOC_Os02g47810Os.46084.1.S1_at9/112+29232278..29235749Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50858.1.S1_at--931--2111Chr02:29219145..29219169 (25 bp)
ACATGGATGCCAAGATCCCTACTTT
LOC_Os02g47780
Os.50858.1.S1_at--284--2791Chr02:29219138..29219158 (21 bp)
AAGATCCCTACTTTCCAGCAGAAAA
LOC_Os02g47780
Os.50858.1.S1_at--53--1291Chr02:29218642..29218666 (25 bp)
AGATCTTCGACATAGAGCTCGCCAA
LOC_Os02g47780
Os.50858.1.S1_at--77--4651Chr02:29218405..29218429 (25 bp)
GCGTACAACCGCCAGCTCCAGAGGT
LOC_Os02g47780
Os.50858.1.S1_at--102--1331Chr02:29218386..29218410 (25 bp)
AGAGGTTCCTCTCGTACGTCAACTC
LOC_Os02g47780
Os.50858.1.S1_at--296--8471Chr02:29218337..29218361 (25 bp)
TGGCGCCAACTGAACTTTGATCCGT
NONE
Os.50858.1.S1_at--597--8811Chr02:29218322..29218346 (25 bp)
TTTGATCCGTTCCAAGGCGTTACTG
NONE
Os.50858.1.S1_at--810--6771Chr02:29218304..29218328 (25 bp)
GTTACTGGGCTATACATTGGTGGTT
NONE
Os.50858.1.S1_at--21--6651Chr02:29218276..29218300 (25 bp)
GTTGTATAATACTCCTGCTTCTGCT
NONE
Os.50858.1.S1_at--1156--2431Chr02:29218036..29218060 (25 bp)
AAAATGTACTACATCCCGTACCACG
NONE
Os.50858.1.S1_at--135--4251Chr02:29218021..29218045 (25 bp)
CCGTACCACGTTGCTGTCGAATAAA
NONE
Target Sequence 
ACATGGATGCCAAGATCCCTACTTTCCAGCAGAAAATAATGCTGATCTGGGGCGAGGAGGACAAGATCTTCGACATAGAG
CTCGCCAAGAAAATGAAAGAGCAGCTGGGCGACGGGTGCTTCCTTCACGGCATCCCCAAGGCCGGCCATCTGCTGCACGT
CGAGCGGCCGTGCGCGTACAACCGCCAGCTCCAGAGGTTCCTCTCGTACGTCAACTCGGAGGAGAAGGAGGCAGCCGGTG
GTGGCGCCAACTGAACTTTGATCCGTTCCAAGGCGTTACTGGGCTATACATTGGTGGTTTTTGTTGTATAATACTCCTGC
TTCTGCTGTTCTTGATGTTTGTTTCTTGAAAGCAAGTGCCAAGTGGTGTTGTGTTGGGGTTGGCCTAGCTGTATGTGGTG
GTAGTGAGTAGGACTAGTACTACAAAAGTAAGTAGGCCTCGTGTTGTCTCGTTCGTTCAGTCATTCGTTTGGATTCTTTG
CAAACTCCGTGAGATTTATCGTATACGAACACCTGTAATCCGCCATCACGTCATAAGGAAAAAAAATGTACTACATCCCG
TACCACGTTGCTGTCGAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis