Browse Element(s) Details


Os.50868.1.S1_at

Description gb:AK059118.1
DB_XREF= gi:32969136
TID=Os.50868.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E11, full insert sequence.
FL= gb:AK059118.1 gb:AK102212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4632011/11ALG6, ALG8 glycosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46260Os.10728.1.S1_at11/112+28206294..28211167Serine carboxypeptidase family protein, expressed
LOC_Os02g46270OsAffx.26278.2.S1_s_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.1.S1_x_at11/112+28214708..28215684hypothetical protein
LOC_Os02g46270OsAffx.26278.2.S1_x_at3/112+28214708..28215684hypothetical protein
LOC_Os02g46280OsAffx.12518.1.S1_at11/112+28216551..28217000hypothetical protein
LOC_Os02g46290OsAffx.24750.1.S1_at11/112+28219067..28219765pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g46300NANA2+28221060..28221482hypothetical protein
LOC_Os02g46310OsAffx.24752.1.S1_at11/112+28224800..28226521Pectinesterase family protein
LOC_Os02g46320Os.50868.1.S1_at11/112+28227792..28231342ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os02g46330OsAffx.12519.1.S1_at11/112+28234927..28235334hypothetical protein
LOC_Os02g46340OsAffx.12520.1.S1_s_at11/112+28240566..28241814Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46350Os.10552.1.S1_at11/112+28246640..28251018cell division cycle protein, putative, expressed
LOC_Os02g46360Os.56129.1.S1_at11/112+28252408..28253495pectinesterase inhibitor domain containing protein
LOC_Os02g46370OsAffx.2978.1.S1_at11/112+28255716..28258232hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50868.1.S1_at--877--691Chr02:28229256..28229280 (25 bp)
ATGAGAAGGCATCACTCCATTTCAC
LOC_Os02g46320
Os.50868.1.S1_at--1038--4111Chr02:28229286..28229310 (25 bp)
CGCTTGCCCTAATTGCCATGGATAG
LOC_Os02g46320
Os.50868.1.S1_at--961--6791Chr02:28230497..28230521 (25 bp)
GTTATTCATTGTTCCCATTGTTGTT
LOC_Os02g46320
Os.50868.1.S1_at--508--6791Chr02:28230547..28230571 (25 bp)
GTTATGCTTCTGTTGACCTATGCTA
LOC_Os02g46320
Os.50868.1.S1_at--1044--3051Chr02:28230641..28230665 (25 bp)
AATCAGGCAGCGTGGTCAGGAAAAA
LOC_Os02g46320
Os.50868.1.S1_at--30--3111Chr02:28230664..28230688 (25 bp)
AATAGCTTCATTGGGTGGATCAGTT
LOC_Os02g46320
Os.50868.1.S1_at--941--211Chr02:28230750..28230774 (25 bp)
ATTTGGCAGCAGATTTCCTTTCCTA
LOC_Os02g46320
Os.50868.1.S1_at--693--3651Chr02:28230767..28230791 (25 bp)
CTTTCCTACCTCTCATAATGGTGTC
LOC_Os02g46320
Os.50868.1.S1_at--819--2971Chr02:28230783..28230807 (25 bp)
AATGGTGTCACTCTACTGTGGTGTC
LOC_Os02g46320
Os.50868.1.S1_at--967--6271Chr02:28230813..28230837 (25 bp)
GATGTACTCATGGATGTGGCAACTC
LOC_Os02g46320
Os.50868.1.S1_at--158--6591Chr02:28230843..28230867 (25 bp)
GATTGTCAGGCACTAATATGGTCTC
LOC_Os02g46320
Target Sequence 
ATGAGAAGGCATCACTCCATTTCACTATTCCGCTTGCCCTAATTGCCATGGATAGCTTGGAGGACGCGAAGCATTATTTT
GTGTTGTCAATAGTTTCATGTTATTCATTGTTCCCATTGTTGTTTGAGAACCAAGAATATCCTATAAAGGTTATGCTTCT
GTTGACCTATGCTACCCTCATGTGGGTAGGATTTTCTTCCCATTTTGCTGCAAAATCTCCTCAAGAAGGGAAGAAAGTAA
ATGAATCAGGCAGCGTGGTCAGGAAAAATAGCTTCATTGGGTGGATCAGTTTTAGCTATCTTTTAGGAATTGTTGCTATA
GAATTATGGTCTCAAGTATTCCACCNCTATGTATTTGGCAGCAGATTTCCTTTCCTACCTCTCATAATGGTGTCACTCTA
CTGTGGTGTCGGAATGATGTACTCATGGATGTGGCAACTCNCATGGATTGTCAGGCACTAATATGGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis