Browse Element(s) Details


Os.50897.1.S1_at

Description gb:AK059333.1
DB_XREF= gi:32969351
TID=Os.50897.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A09, full insert sequence.
FL= gb:AK059333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5756010/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed
LOC_Os03g57510OsAffx.13524.1.S1_at11/113+32730579..32733924Calcium-dependent protein kinase, isoform AK1, putative
LOC_Os03g57520OsAffx.13525.1.S1_x_at11/113+32736937..32737440VQ motif family protein, expressed
LOC_Os03g57530Os.8416.1.S1_at10/113+32739529..32741924expressed protein
LOC_Os03g57540NANA3+32749194..32749616hypothetical protein
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein
LOC_Os03g57580Os.7463.1.S1_at11/113+32768091..32771417expressed protein
LOC_Os03g57580Os.46765.1.S1_x_at9/113+32768091..32771417expressed protein
LOC_Os03g57600Os.47326.1.S1_at11/113+32771579..32773664expressed protein
LOC_Os03g57610OsAffx.14941.1.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.4.S1_s_at11/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.1.S1_at10/113+32775141..32778122hypothetical protein
LOC_Os03g57610OsAffx.14941.5.S1_at9/113+32775141..32778122hypothetical protein
LOC_Os03g57620OsAffx.13528.1.S1_at10/113+32784843..32786914hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50897.1.S1_at--23--8111NONE
GGACCCATCATAGTCATAGATGTCG
NONE
Os.50897.1.S1_at--723--6671Chr03:32761481..32761505 (25 bp)
GTTGCTGTAAGCTACAAATCTCAGT
LOC_Os03g57560
Os.50897.1.S1_at--751--6911Chr03:32761504..32761528 (25 bp)
GTATGGTTGGAGGATGACTCTGCAA
LOC_Os03g57560
Os.50897.1.S1_at--362--10611Chr03:32761676..32761700 (25 bp)
TTCTGTGTTTGTCAGTTTAGCCTGG
LOC_Os03g57560
Os.50897.1.S1_at--1151--10312Chr03:32761691..32761715 (25 bp)
TTTAGCCTGGTAGTGATAGACTGAT
LOC_Os03g57560
Os.50897.1.S1_at--831--6371Chr03:32761717..32761741 (25 bp)
GATCCTGATGATGTAGCTGTGTGTT
LOC_Os03g57560
Os.50897.1.S1_at--1021--6951Chr03:32761729..32761753 (25 bp)
GTAGCTGTGTGTTAGTTTGAACGAT
LOC_Os03g57560
Os.50897.1.S1_at--1003--10491Chr03:32761763..32761787 (25 bp)
TTAAGCTTTTTGTTCGATGCCCTGG
LOC_Os03g57560
Os.50897.1.S1_at--876--10791Chr03:32761772..32761796 (25 bp)
TTGTTCGATGCCCTGGAACTGTCCA
LOC_Os03g57560
Os.50897.1.S1_at--892--5451Chr03:32761787..32761811 (25 bp)
GAACTGTCCAGGCATGAGTGACCTT
LOC_Os03g57560
Os.50897.1.S1_at--89--6111Chr03:32761802..32761826 (25 bp)
GAGTGACCTTGTAGAAACTTTCACA
LOC_Os03g57560
Target Sequence 
GGACCCATCATAGTCATAGATGTCGGAGGAAAGACAGAATGTTGCTGTAAGCTACAAATCTCAGTATGGTTGGAGGATGA
CTCTGCAAAGGTTGGAGTATGTATGACAAAGCGCGAAGAAAAAGCTTTCAAGGAAAGGGTTTCTGAAGTTTTTATTGGTT
TGAACAGATCCTGGAAATGAATTCATATGGATGGGGAGCTATATCAGTTGTAGAAGTTCTTTTTTTCCTTAAGTTTTCTG
TGTTTGTCAGTTTAGCCTGGTAGTGATAGACTGATAGATCCTGATGATGTAGCTGTGTGTTAGTTTGAACGATTTTCTGT
TTTTAAGCTTTTTGTTCGATGCCCTGGAACTGTCCAGGCATGAGTGACCTTGTAGAAACTTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis