Browse Element(s) Details


Os.50920.1.A1_x_at

Description gb:AK065758.1
DB_XREF= gi:32975776
TID=Os.50920.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038E14, full insert sequence.
FL= gb:AK065758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3279011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32750OsAffx.31989.1.S1_at11/1112+19750975..19758056expressed protein
LOC_Os12g32750Os.18223.1.S1_s_at11/1112+19750975..19758056expressed protein
LOC_Os12g32760Os.10344.1.S1_at10/1112+19759781..19762953Sugar transporter family protein, expressed
LOC_Os12g32770OsAffx.31309.1.S1_at6/1112+19763514..19765561expressed protein
LOC_Os12g32790Os.50920.1.A1_x_at11/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32790OsAffx.7771.1.S1_x_at8/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32800OsAffx.22145.1.S1_x_at1/1112+19785197..19796040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32810NANA12+19797561..19798097hypothetical protein
LOC_Os12g32820Os.49696.1.S1_at11/1112+19804196..19808546PDR-like ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50920.1.A1_x_at--184--4332Chr12:19780488..19780512 (25 bp)
CCATTTGTCATCTTTGCTCTAGGGA
LOC_Os12g32790
Os.50920.1.A1_x_at--913--211Chr12:19780618..19780642 (25 bp)
ATTTGTCATCTTTACTCTAGGGAGG
LOC_Os12g32790
Os.50920.1.A1_x_at--117--5993Chr12:19780645..19780669 (25 bp)
GAGACTTTGCTCACATCTTTCAAGG
LOC_Os12g32790
Os.50920.1.A1_x_at--679--7731Chr12:19780708..19780732 (25 bp)
GGTGGTTAGGGCTTCGTTGCTCAAC
LOC_Os12g32790
Os.50920.1.A1_x_at--1118--3753Chr12:19780751..19780775 (25 bp)
CTCTTGGTGGTGTGATGCTCGCAAA
LOC_Os12g32790
Os.50920.1.A1_x_at--954--612Chr12:19780820..19780844 (25 bp)
ATGCGGGCATCATCTTGGTGACATG
LOC_Os12g32790
Os.50920.1.A1_x_at--341--2493Chr12:19780856..19780880 (25 bp)
AACAGCGCAATGCTCGTGTCTTTGA
LOC_Os12g32790
Os.50920.1.A1_x_at--518--4991Chr12:19780884..19780908 (25 bp)
GCATGCAGTGTTGTCGGTGAATCTT
LOC_Os12g32790
Os.50920.1.A1_x_at--520--7772Chr12:19780899..19780923 (25 bp)
GGTGAATCTTTGTGCCGCAATCGAG
LOC_Os12g32790
Os.50920.1.A1_x_at--21--3632Chr12:19780953..19780977 (25 bp)
CTTGACTTCCTCTCTTTGAGTTGTA
LOC_Os12g32790
Os.50920.1.A1_x_at--169--9311Chr12:19780996..19781020 (25 bp)
TCCCTCGCCGTTGTTGTATACATAA
LOC_Os12g32790
Target Sequence 
CCATTTGTCATCTTTGCTCTAGGGAGGAAGTTCTTCATGAAGCGTCGCGGTTGGCACCTCGCCTCCATTTGTCATCTTTA
CTCTAGGGAGGAAGAGACTTTGCTCACATCTTTCAAGGTTGTTCTTACACACAAGAAGTGTGGAGTAGTATCAGAGGGTG
GTTAGGGCTTCGTTGCTCAACGCCGATGGAGAGTCTTCCCTCTTGGTGGTGTGATGCTCGCAAAGCAATCAAGAAGCGGG
ACAGGAGAGCTTTTGATGAGAGCTTTTGATGCGGGCATCATCTTGGTGACATGGCTAATTTGGAAACAGCGCAATGCTCG
TGTCTTTGAGGGGCATGCAGTGTTGTCGGTGAATCTTTGTGCCGCAATCGAGGATGAGTGGAAATCGTGGCAAGAAGCGG
GCTTGACTTCCTCTCTTTGAGTTGTAAAGTGGAGGCGTGGGTTTTCCCTCGCCGTTGTTGTATACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50920.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis