Browse Element(s) Details


Os.50946.1.S1_at

Description gb:AK100447.1
DB_XREF= gi:32985656
TID=Os.50946.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090H21, full insert sequence.
FL= gb:AK100447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0619011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06140Os.52494.2.S1_at1/112+3065795..3070820retrotransposon protein, putative, unclassified
LOC_Os02g06150NANA2+3071796..3073432Leucine Rich Repeat family protein
LOC_Os02g06160OsAffx.11910.1.S1_at11/112+3076493..3078824Protein kinase domain containing protein
LOC_Os02g06170Os.38286.1.S1_at7/112+3080550..3082855expressed protein
LOC_Os02g06170OsAffx.20519.2.S1_at4/112+3080550..3082855expressed protein
LOC_Os02g06170OsAffx.20519.1.S1_at1/112+3080550..3082855expressed protein
LOC_Os02g06180OsAffx.2518.1.S1_at1/112+3084913..3087072Leucine Rich Repeat family protein, expressed
LOC_Os02g06180Os.52494.2.S1_at1/112+3084913..3087072Leucine Rich Repeat family protein, expressed
LOC_Os02g06190Os.50946.1.S1_at11/112+3092568..3095101Leucine Rich Repeat family protein, expressed
LOC_Os02g06200OsAffx.11911.1.S1_at11/112+3097245..3099377Leucine Rich Repeat family protein, expressed
LOC_Os02g06210Os.24551.4.S1_at11/112+3106308..3108577Leucine Rich Repeat family protein, expressed
LOC_Os02g06220OsAffx.2519.1.S1_at11/112+3113443..3114237Conotoxin family protein, expressed
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50946.1.S1_at--585--8131Chr02:3093057..3093081 (25 bp)
GGACAGCTTAGCACATTCCCAAGTA
LOC_Os02g06190
Os.50946.1.S1_at--802--2831Chr02:3093037..3093061 (25 bp)
AAGTACTAGCTTTGATGGGAACCCA
LOC_Os02g06190
Os.50946.1.S1_at--137--8171Chr02:3093020..3093044 (25 bp)
GGAACCCAAAGTTGTGTGGTCCTAT
LOC_Os02g06190
Os.50946.1.S1_at--1155--631Chr02:3092997..3093021 (25 bp)
ATGCTTGCACGCCATTGTGGTTTAG
LOC_Os02g06190
Os.50946.1.S1_at--310--8831Chr02:3092909..3092933 (25 bp)
TGATTTCCTTTGGTGCATTCTTTGC
LOC_Os02g06190
Os.50946.1.S1_at--879--7251Chr02:3092859..3092883 (25 bp)
GTCCTATCAAGGTTTTTCTAGCTCT
LOC_Os02g06190
Os.50946.1.S1_at--360--9991Chr02:3092841..3092865 (25 bp)
TAGCTCTACTTCAGTTAGGTCGCAA
LOC_Os02g06190
Os.50946.1.S1_at--1023--2991Chr02:3092795..3092819 (25 bp)
AATGATAGCTGTCACTATCTCCGGC
LOC_Os02g06190
Os.50946.1.S1_at--668--6271Chr02:3092762..3092786 (25 bp)
GATGATTTCTTATAGCCCAAGCTTA
LOC_Os02g06190
Os.50946.1.S1_at--639--5971Chr02:3092643..3092667 (25 bp)
GAGAAGCCACCTTTTTGCAGATATA
LOC_Os02g06190
Os.50946.1.S1_at--840--1931Chr02:3092584..3092608 (25 bp)
ACGGAAGCGCCAAAGTTGTGTCAAT
LOC_Os02g06190
Target Sequence 
GGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGCTTGCACGCCATTGTGG
TTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACAAGGTTGTATCATCATTTGTCTTTATGATTTCCTTTG
GTGCATTCTTTGCTGTAGGGGTGTTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTAGGTCGCA
AACCAACCAAGACCTGTGACACAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTA
AGCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCAGAGAGATTAAATTGGAAGG
TGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAAATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAG
CGCCAAAGTTGTGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis