Browse Element(s) Details


Os.50950.1.S1_x_at

Description gb:AK059662.1
DB_XREF= gi:32969680
TID=Os.50950.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E03, full insert sequence.
FL= gb:AK059662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4473011/11tetracycline transporter protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44750OsAffx.12496.1.S1_at11/112+27106140..27108049hypothetical protein
LOC_Os02g44750OsAffx.661.1.S1_x_at1/112+27106140..27108049hypothetical protein
LOC_Os02g44760OsAffx.12497.1.S1_at11/112+27109727..27110312hypothetical protein
LOC_Os02g44770Os.49105.1.S1_at11/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44770Os.49105.2.S1_at10/112+27112137..27116566mechanosensitive ion channel domain-containing protein, putative, expressed
LOC_Os02g44780Os.18321.1.S1_at11/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.2.S1_at10/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44780Os.18321.3.S1_at9/112+27114816..27118593Polyprenyl synthetase family protein, expressed
LOC_Os02g44790NANA2+27121097..27124453transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008493molecular_functiontetracycline transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50950.1.S1_x_at--812--4831Chr02:27099293..27099317 (25 bp)
GCTCAAGGCTGTATATCGGGCATAA
LOC_Os02g44730
Os.50950.1.S1_x_at--312--4971Chr02:27099312..27099336 (25 bp)
GCATAAGCTCGTTTGCCAGCATATT
LOC_Os02g44730
Os.50950.1.S1_x_at--800--9731Chr02:27099345..27099365 (21 bp)
TAATTTTTACCCCTCTAACAGCATG
LOC_Os02g44730
Os.50950.1.S1_x_at--48--7711Chr02:27099454..27099478 (25 bp)
GGGTCCTTTCAGAAACAGCGCCATT
LOC_Os02g44730
Os.50950.1.S1_x_at--1072--10391Chr02:27099513..27099611 (25 bp)
TTTTGTACGCTCATTGCCTTCATTA
LOC_Os02g44730
Os.50950.1.S1_x_at--833--10231Chr02:27099709..27099733 (25 bp)
TTTGGCCAACCTGAAACCATTGTAA
LOC_Os02g44730
Os.50950.1.S1_x_at--296--7351Chr02:27099767..27099791 (25 bp)
GTGAAACCATCCCATTGTCTACTAT
LOC_Os02g44730
Os.50950.1.S1_x_at--57--10811Chr02:27099781..27099805 (25 bp)
TTGTCTACTATCCTGATGGGCGAAT
LOC_Os02g44730
Os.50950.1.S1_x_at--481--10211Chr02:27099817..27099841 (25 bp)
TATTCCTCTGCAAATCTCCATCAGG
LOC_Os02g44730
Os.50950.1.S1_x_at--630--4411Chr02:27099895..27099919 (25 bp)
GCCAGCCCAGCTTGTTGTAATATCA
LOC_Os02g44730
Os.50950.1.S1_x_at--879--191Chr02:27099956..27099980 (25 bp)
ATTTCGGCCGGAGCTTCAGACATGA
LOC_Os02g44730
Target Sequence 
GCTCAAGGCTGTATATCGGGCATAAGCTCGTTTGCCAGCATATTAGCTCCACTAATTTTTACCCCTCTAACAGCATGGGT
CCTTTCAGAAACAGCGCCATTCAAATTCAAAGGTTTCAGTATCATGTGTGCTGGCTTTTGTACGCTCATTGCCTTCATTA
TCAGCATGAGGATGCGAGCAGGGCAATCTGGTGCAAGTGAGANGTTGGCCATTGTGCAGCATGAGCAAGCATGATGAGTA
TGCTAGTAGATTGNAAATTTGGCCAACCTGAAACCATTGTAAATTTACATACTGTACATTGTAAATTTGGCCAACGTGAA
ACCATCCCATTGTCTACTATCCTGATGGGCGAATGACNATTCCCCTATTCCTCTGCAAATCTCCATCAGGGAAGGGAAGG
ATTCTTCTTCAGATAGTAAATTGACAACTGCTATGNCATAGAAGCCAGCCCAGCTTGTTGTAATATCACCTAGTAGTGTA
TATTGCTGGANTGATGGCCTACATATTTCGGCCGGAGCTTCAGACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50950.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis