Browse Element(s) Details


Os.50984.1.S1_s_at

Description gb:AK059949.1
DB_XREF= gi:32969967
TID=Os.50984.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A10, full insert sequence.
FL= gb:AK059949.1 gb:AK104548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3771011/11Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein
LOC_Os12g37680OsAffx.32072.2.S1_x_at4/1112+23097306..23097563hypothetical protein
LOC_Os12g37680OsAffx.32072.1.S1_x_at2/1112+23097306..23097563hypothetical protein
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37730NANA12+23131370..23131983hypothetical protein
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50984.1.S1_s_at--515--1532Chr12:23123383..23123407 (25 bp)
AGCAGTGCTTTGTCATAGTTGAGAG
LOC_Os12g37710
Os.50984.1.S1_s_at--997--5031Chr12:23123407..23123431 (25 bp)
GCAGAATTTTTTGTATAGCTAGCAG
LOC_Os12g37710
Os.50984.1.S1_s_at--310--10011Chr12:23123422..23123446 (25 bp)
TAGCTAGCAGATTGTCTGTTCTCTG
LOC_Os12g37710
Os.50984.1.S1_s_at--1075--6591Chr12:23123431..23123455 (25 bp)
GATTGTCTGTTCTCTGCATTATTCT
LOC_Os12g37710
Os.50984.1.S1_s_at--1016--8791Chr12:23123438..23123462 (25 bp)
TGTTCTCTGCATTATTCTTTCACCC
LOC_Os12g37710
Os.50984.1.S1_s_at--100--10211Chr12:23123450..23123474 (25 bp)
TATTCTTTCACCCTCCTTTTGTTAT
LOC_Os12g37710
Os.50984.1.S1_s_at--282--10531Chr12:23123456..23123480 (25 bp)
TTCACCCTCCTTTTGTTATCTTGTA
LOC_Os12g37710
Os.50984.1.S1_s_at--469--4191Chr12:23123460..23123484 (25 bp)
CCCTCCTTTTGTTATCTTGTACAAG
LOC_Os12g37710
Os.50984.1.S1_s_at--801--1251Chr12:23123483..23123507 (25 bp)
AGATTATTGCCATATAGTACCTTAT
LOC_Os12g37710
Os.50984.1.S1_s_at--1044--4411Chr12:23123491..23123515 (25 bp)
GCCATATAGTACCTTATGTGTAAGA
LOC_Os12g37710
Os.50984.1.S1_s_at--1049--271Chr12:23123522..23123546 (25 bp)
ATAGTACCTCTGTAAGATGCTCTGG
LOC_Os12g37710
Target Sequence 
AGCAGTGCTTTGTCATAGTTGAGAGCAGAATTTTTTGTATAGCTAGCAGATTGTCTGTTCTCTGCATTATTCTTTCACCC
TCCTTTTGTTATCTTGTACAAGATTATTGCCATATAGTACCTTATGTGTAAGATTATATATAGTACCTCTGTAAGATGCT
CTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50984.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis