Browse Element(s) Details


Os.50995.1.S1_at

Description gb:AK061435.1
DB_XREF= gi:32971453
TID=Os.50995.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A09, full insert sequence.
FL= gb:AK061435.1 gb:AK060038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5017011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50149Os.36511.1.S1_at1/111+29150447..29150624NA
LOC_Os01g50160Os.9066.1.S1_s_at11/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50160Os.49647.1.S1_at8/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50170Os.50995.1.S1_at11/111+29162090..29163731Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g50180OsAffx.19542.3.S1_x_at10/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50180OsAffx.9949.1.S1_at1/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50190OsAffx.29949.1.S1_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50190OsAffx.29949.1.S1_x_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50200Os.5862.1.S1_at10/111+29174805..29176566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50995.1.S1_at--563--4771Chr01:29163185..29163209 (25 bp)
GCTGCTGTCACAGATGGGCTTTCAG
LOC_Os01g50170
Os.50995.1.S1_at--831--8531Chr01:29163316..29163340 (25 bp)
TGGACCTGTCCACCGAGAATTACTT
LOC_Os01g50170
Os.50995.1.S1_at--118--4731Chr01:29163379..29163403 (25 bp)
GCTGGTCCGTGGTGAAATCATCGCA
LOC_Os01g50170
Os.50995.1.S1_at--289--5171Chr01:29163401..29163425 (25 bp)
GCAAGCCTTGACGATCATCGGCAAT
LOC_Os01g50170
Os.50995.1.S1_at--39--1911Chr01:29163445..29163469 (25 bp)
ACGTCGTGTTTGATCTGTCCGGCAA
LOC_Os01g50170
Os.50995.1.S1_at--560--4131Chr01:29163492..29163516 (25 bp)
CCCACCGCCTGATACGGGAGATTAT
LOC_Os01g50170
Os.50995.1.S1_at--457--691Chr01:29163515..29163539 (25 bp)
ATGACCGTTGATTTTGTGCGCCGTA
LOC_Os01g50170
Os.50995.1.S1_at--662--9151Chr01:29163531..29163555 (25 bp)
TGCGCCGTATGTAGTACTAGCACTC
LOC_Os01g50170
Os.50995.1.S1_at--1128--3331Chr01:29163567..29163591 (25 bp)
CACGTACAATTGTGCCGTAGCGAAT
LOC_Os01g50170
Os.50995.1.S1_at--1082--9191Chr01:29163614..29163638 (25 bp)
TGCCATCCGCGCTTAGTTGTAAGTA
LOC_Os01g50170
Os.50995.1.S1_at--957--4611Chr01:29163640..29163664 (25 bp)
GCGAGCTTATGTAATAGTCTTCCAA
LOC_Os01g50170
Target Sequence 
GCTGCTGTCACAGATGGGCTTTCAGAAGCCACCACCGGCAGCGAACGACGACGACCTGATCTGTTTCACCGGGGGGTCGT
CGACGACGACGTTCCCGTCCATGGTGCTGCACTTCGACGGCGGCGCCGACATGGACCTGTCCACCGAGAATTACTTGCCG
CAAATGCAAGGCCAGAACGGGGAGACAGCCCGGTGCTGGTCCGTGGTGAAATCATCGCAAGCCTTGACGATCATCGGCAA
TATCATGCAGATGGACTTCCACGTCGTGTTTGATCTGTCCGGCAACGCGCGGATGCTGTTCCAACCGCCCACCGCCTGAT
ACGGGAGATTATGACCGTTGATTTTGTGCGCCGTATGTAGTACTAGCACTCTAGCAGTGTAGCACGTACAATTGTGCCGT
AGCGAATAAGTTCTGCACAAATTATTTTCTGCCATCCGCGCTTAGTTGTAAGTACGCGAGCTTATGTAATAGTCTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis