Browse Element(s) Details


Os.50996.1.S1_x_at

Description gb:AK060042.1
DB_XREF= gi:32970060
TID=Os.50996.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-F01, full insert sequence.
FL= gb:AK060042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g178707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17820Os.49894.1.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.11522.2.S1_at11/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820OsAffx.17050.1.S1_x_at10/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17820Os.5188.1.S1_at1/118+10918881..10929829transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g17830OsAffx.17051.1.S1_at11/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830Os.10719.1.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17830OsAffx.28164.2.S1_at1/118+10932102..10938791transposon protein, putative, unclassified
LOC_Os08g17850OsAffx.17052.1.S1_at11/118+10943776..10944434hAT family dimerisation domain containing protein
LOC_Os08g17860OsAffx.21756.3.S1_x_at1/118+10945255..10949229transposon protein, putative, Pong sub-class
LOC_Os08g17870OsAffx.17053.1.S1_x_at11/118+10953899..10960966expressed protein
LOC_Os08g17870OsAffx.17053.1.S1_at11/118+10953899..10960966expressed protein
LOC_Os08g17870Os.50996.1.S1_x_at7/118+10953899..10960966expressed protein
LOC_Os08g17880OsAffx.17054.1.S1_at11/118+10964219..10965351hypothetical protein
LOC_Os08g17890Os.45173.1.S1_x_at1/118+10969748..10976599retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17900OsAffx.20733.1.A1_x_at1/118+10977364..10978215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17910OsAffx.22699.1.S1_x_at2/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17910OsAffx.20553.1.S1_at1/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50996.1.S1_x_at--946--1131Chr08:10960185..10960209 (25 bp)
AGTCCTGCTCCCACAAGAAGGCGGT
LOC_Os08g17870
Os.50996.1.S1_x_at--774--10511Chr08:10960223..10960247 (25 bp)
TTCACCCTTGTCTGGAACGTCTCAT
LOC_Os08g17870
Os.50996.1.S1_x_at--107--10731Chr08:10960254..10960689 (25 bp)
TTGCTCGTGTCTGGGCTGTGTTCAT
LOC_Os08g17870
Os.50996.1.S1_x_at--143--7731Chr08:10960696..10960720 (25 bp)
GGTGGCCATGAAGTGCTACCAGCAG
LOC_Os08g17870
Os.50996.1.S1_x_at--890--5771Chr08:10960790..10960814 (25 bp)
GACGATGAGTCACCGCAGGAAGAAA
LOC_Os08g17870
Os.50996.1.S1_x_at--1028--1411Chr08:10960810..10960834 (25 bp)
AGAAACTCCTGCTAGATCAAGCCCG
LOC_Os08g17870
Os.50996.1.S1_x_at--782--3451Chr08:10960905..10960929 (25 bp)
CAGTCTCCGGCGAGTTTGCAAGGGA
LOC_Os08g17870
Os.50996.1.S1_x_at--1072--4351Chr08:10960954..10960978 (25 bp)
CCAGCCTAGGTGACAGGACAAATCT
NONE
Os.50996.1.S1_x_at--618--2271Chr08:10960973..10960997 (25 bp)
AAATCTGTGGATGCCGTATGTTTTT
NONE
Os.50996.1.S1_x_at--518--9771Chr08:10961047..10961071 (25 bp)
TAATGTCACGAAATGGTTCACGGAA
NONE
Os.50996.1.S1_x_at--887--6911Chr08:10961079..10961103 (25 bp)
GTATGATCCACACATAGGAGTTCCA
NONE
Target Sequence 
AGTCCTGCTCCCACAAGAAGGCGGTCGTGGCAGCCGTCTTCACCCTTGTCTGGAACGTCTCATCCACGGTTGCTCGTGTC
TGGGCTGTGTTCATGCTGGTGGTGGCCATGAAGTGCTACCAGCAGCGGATGATGGAGTACGGCTGGAGCAGCACGGTGGA
GGACTCACAGGAGGCCACCGCCGCCGCCACCGGCGACGATGAGTCACCGCAGGAAGAAACTCCTGCTAGATCAAGCCCGG
CCAAGGCGCACGACCACGAGCCGGCACAGGGATTTGGGGCGGCGGCGCCGGCGCGGCATCGCCGGACGCCAGTCTCCGGC
GAGTTTGCAAGGGAGAGGCTGAGAGTGAGGGGTGGCATCCAGCCTAGGTGACAGGACAAATCTGTGGATGCCGTATGTTT
TTTTTTTCTTTCATTTTTTTTACATTGTGGTAGTTTTGGGTTGTGAGGACGTAATGTCACGAAATGGTTCACGGAAATAA
TGAGTATGATCCACACATAGGAGTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50996.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis