Browse Element(s) Details


Os.50998.1.S1_at

Description gb:AK060067.1
DB_XREF= gi:32970085
TID=Os.50998.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20132 protein tyrosine phosphatase-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H07, full insert sequence.
FL= gb:AY224424.1 gb:AK060067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4432011/11Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50998.1.S1_at--813--51Chr08:27758594..27758618 (25 bp)
ATTGAGGTGACCTCCATATCCAGGC
LOC_Os08g44320
Os.50998.1.S1_at--736--1791Chr08:27758562..27758586 (25 bp)
ACCCTCCGACTTCCGAGATTTTGAT
LOC_Os08g44320
Os.50998.1.S1_at--408--6551Chr08:27758546..27758570 (25 bp)
GATTTTGATCTTATCCTTGCAATGG
LOC_Os08g44320
Os.50998.1.S1_at--740--7411Chr08:27757251..27757275 (25 bp)
GTGTTCCTATTGCAAGCGTCATACT
LOC_Os08g44320
Os.50998.1.S1_at--748--8871Chr08:27757227..27757251 (25 bp)
TGAGTCAGAAGTCCCAGATCCGTAT
LOC_Os08g44320
Os.50998.1.S1_at--842--1251Chr08:27757212..27757236 (25 bp)
AGATCCGTATTATGGAGGCCCTCAA
LOC_Os08g44320
Os.50998.1.S1_at--587--1393Chr02:18489176..18489200 (25 bp)
AGACGCATGCGAGTCATTACTTGAC
NONE
Os.50998.1.S1_at--38--152Chr11:18704153..18704177 (25 bp)
ATTACTTGACAGCATCGTGGCAGAG
NONE
Os.50998.1.S1_at--207--6451Chr08:27756205..27756229 (25 bp)
GATCAGAATCTATCTATGCCATTTG
LOC_Os08g44320
Os.50998.1.S1_at--865--5534Chr03:29985191..29985214 (24 bp)
GAAACACTCACATCAGCATGCATGT
NONE
Os.50998.1.S1_at--460--6973Chr02:18493009..18493033 (25 bp)
GTACCCATGTTCATACAATGTCAGG
NONE
Target Sequence 
ATTGAGGTGACCTCCATATCCAGGCCTGTCAAACCCTCCGACTTCCGAGATTTTGATCTTATCCTTGCAATGGATAGGCA
GAATTATGAAGACCTACTCAGTTCATTTGAGAGATGGAGACACAGGGAACCCCTCCCAGACAGTGGACCCAAGAAGGTTA
AGTTGATGTGTTCCTATTGCAAGCGTCATACTGAGTCAGAAGTCCCAGATCCGTATTATGGAGGCCCTCAAGGATTTGAA
AAGGTGCTGGATCTGCTGGAAGACGCATGCGAGTCATTACTTGACAGCATCGTGGCAGAGAATGCAAGCGTTTNTGCTTG
ATCTCAATGAAGCTATCTGGAGGCAATGTAAGCATCATTTTTTCTATGTAACCATGATCAGAATCTATCTATGCCATTTG
ATTGCGATTCAGATAACCAGAAACACTCACATCAGCATGCATGTACCCATGTTCATACAATGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis