Browse Element(s) Details


Os.51032.1.S1_at

Description gb:AK060275.1
DB_XREF= gi:32970293
TID=Os.51032.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-G12, full insert sequence.
FL= gb:AK060275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3015411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51032.1.S1_at--185--1651Chr07:17803843..17803867 (25 bp)
AGCGCGGCGAAACATAACGCGGCAT
LOC_Os07g30154
Os.51032.1.S1_at--1064--2071Chr07:17803854..17803878 (25 bp)
ACATAACGCGGCATGCCCCGGTCAG
LOC_Os07g30154
Os.51032.1.S1_at--83--3491Chr07:17803876..17803900 (25 bp)
CAGGAGCCGTCGAGGATCATGCAGC
LOC_Os07g30154
Os.51032.1.S1_at--731--4731Chr07:17803899..17803923 (25 bp)
GCTGTCGGAGAGAACCTTCGTTGCC
LOC_Os07g30154
Os.51032.1.S1_at--16--7191Chr07:17803902..17803926 (25 bp)
GTCGGAGAGAACCTTCGTTGCCGTC
LOC_Os07g30154
Os.51032.1.S1_at--433--2771Chr07:17803933..17803957 (25 bp)
AAGACCCACTGCACGTCGCCGGTGT
LOC_Os07g30154
Os.51032.1.S1_at--30--3731Chr07:17804108..17804132 (25 bp)
CTAATTAATTAATGCCGTCGAGCTC
LOC_Os07g30154
Os.51032.1.S1_at--397--10371Chr07:17804149..17804173 (25 bp)
TTTTTTCTGCTCTGCACTAGCTTAA
LOC_Os07g30154
Os.51032.1.S1_at--673--4811Chr07:17804157..17804181 (25 bp)
GCTCTGCACTAGCTTAATGCCATTT
LOC_Os07g30154
Os.51032.1.S1_at--1100--10811Chr07:17804202..17804226 (25 bp)
TTGGAGTAGCGCAGATAGCTTATGT
LOC_Os07g30154
Os.51032.1.S1_at--1065--291Chr07:17804216..17804240 (25 bp)
ATAGCTTATGTATTCGTTGATCTTG
LOC_Os07g30154
Target Sequence 
AGCGCGGCGAAACATAACGCGGCATGCCCCGGTCAGGAGCCGTCGAGGATCATGCAGCTGTCGGAGAGAACCTTCGTTGC
CGTCGCCGGCAAGACCCACTGCACGTCGCCGGTGTGCGCGTCGGCGACCATCTGCAAGCCCATCTGCCAGCCGCGTCGTC
GACCAAGCCGGCGCCCAAGCCGCACCCTGGCCAGCCGCCGCACCCAACGCCGATGCTGACGCCGTCGTACGGAACGCCGA
GCCCGTACCACTCGCCGGCGAGGAACTAATTAATTAATGCCGTCGAGCTCACACATTATTATGATTTTTTTTCTGCTCTG
CACTAGCTTAATGCCATTTATGATTTATTGTTGTCAAGGTTGGAGTAGCGCAGATAGCTTATGTATTCGTTGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis