Browse Element(s) Details


Os.51043.1.S1_at

Description gb:AK060343.1
DB_XREF= gi:32970361
TID=Os.51043.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-E01, full insert sequence.
FL= gb:AK060343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0773011/11Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009528cellular_componentplastid inner membrane
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51043.1.S1_at--271--331Chr01:3709546..3709570 (25 bp)
ATACTGTCATTTCTGCTGTCTTTGC
LOC_Os01g07730
Os.51043.1.S1_at--223--10291Chr01:3709566..3709590 (25 bp)
TTTGCCTCTGATGCTGTTCTCAGAA
LOC_Os01g07730
Os.51043.1.S1_at--606--7671Chr01:3709592..3709616 (25 bp)
GGGTCAAGTTCAGCCCAGGATACCT
LOC_Os01g07730
Os.51043.1.S1_at--785--8451Chr01:3709708..3709731 (24 bp)
TGGCCTTAACCTCCAAGAGCTGTGT
LOC_Os01g07730
Os.51043.1.S1_at--219--1371Chr01:3709735..3709759 (25 bp)
AGAGCAGCACTAGCTGGCTTTTGCT
LOC_Os01g07730
Os.51043.1.S1_at--880--9711Chr01:3709948..3709972 (25 bp)
TCAAGCGTGTGGTCGTCATCGTGGC
LOC_Os01g07730
Os.51043.1.S1_at--1099--8131Chr01:3710216..3710240 (25 bp)
GGACACGCTTAATTACAGTTCTCGC
LOC_Os01g07730
Os.51043.1.S1_at--72--3451Chr01:3710231..3710255 (25 bp)
CAGTTCTCGCAGTTTTTGTTTTGAT
LOC_Os01g07730
Os.51043.1.S1_at--1097--1491Chr01:3710314..3710338 (25 bp)
AGCACCGATTGTACTACACGACCTA
LOC_Os01g07730
Os.51043.1.S1_at--423--1871Chr01:3710331..3710355 (25 bp)
ACGACCTACAGTCTCATTTTTCACA
LOC_Os01g07730
Os.51043.1.S1_at--777--5591Chr01:3710396..3710420 (25 bp)
GAAATTCATTAGTGTCCAGGCGCAA
LOC_Os01g07730
Target Sequence 
ATACTGTCATTTCTGCTGTCTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCAC
TGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATGGCTACCAGAAGCTCTCCTACT
TGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCGCCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTT
CTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAG
GTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCTCGCAGTTTTTGTTTTGATTT
GGGATACATAGATTAGGCTTGTACATCGACGAAGAAAATGAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCT
ACAGTCTCATTTTTCACAAAATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGCG
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis