Browse Element(s) Details


Os.51091.1.S1_at

Description gb:AK060625.1
DB_XREF= gi:32970643
TID=Os.51091.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G08, full insert sequence.
FL= gb:AK060625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1967011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19610Os.18212.1.S1_at11/113+11012355..11014375Pectinesterase family protein, expressed
LOC_Os03g19620OsAffx.12939.2.S1_at11/113+11015747..11016130hypothetical protein
LOC_Os03g19630OsAffx.27626.1.S1_at11/113+11018627..11019196Myb-like DNA-binding domain containing protein
LOC_Os03g19640OsAffx.12941.1.S1_at11/113+11024800..11025308hypothetical protein
LOC_Os03g19650Os.26818.2.S1_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.1.S1_a_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19650Os.26818.2.S2_at11/113+11027321..11032298PPR2, putative, expressed
LOC_Os03g19660OsAffx.12942.2.S1_at11/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_at10/113+11034988..11036603hypothetical protein
LOC_Os03g19660OsAffx.12942.3.S1_x_at8/113+11034988..11036603hypothetical protein
LOC_Os03g19670Os.51091.1.S1_at11/113+11038498..11040989GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g19680Os.27994.1.A1_at11/113+11047829..11049914enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os03g19690OsAffx.25146.1.S1_at11/113+11050827..11059946expressed protein
LOC_Os03g19690Os.7107.1.S1_x_at11/113+11050827..11059946expressed protein
LOC_Os03g19700Os.56274.1.S1_at11/113+11060503..11062018expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51091.1.S1_at--1051--2571Chr03:11040286..11040310 (25 bp)
AACGTTGGGCCGATCGGGTGCATCC
LOC_Os03g19670
Os.51091.1.S1_at--784--7771Chr03:11040302..11040326 (25 bp)
GGTGCATCCCGTACCTGAGGGACAC
LOC_Os03g19670
Os.51091.1.S1_at--842--531Chr03:11040481..11040503 (23 bp)
ATCGCCAACTACAAGTCGCACGGGT
LOC_Os03g19670
Os.51091.1.S1_at--554--4691Chr03:11040696..11040720 (25 bp)
GCGGACAGGTCCAAGTACGTGTTCT
LOC_Os03g19670
Os.51091.1.S1_at--1026--8351Chr03:11040788..11040812 (25 bp)
GGCGGACATCTTCCCGATCAACGTG
LOC_Os03g19670
Os.51091.1.S1_at--817--371Chr03:11040804..11040828 (25 bp)
ATCAACGTGCGCCAGCTGATCACGA
LOC_Os03g19670
Os.51091.1.S1_at--1101--4731Chr03:11040818..11040842 (25 bp)
GCTGATCACGAGCTGATACCGATAA
LOC_Os03g19670
Os.51091.1.S1_at--1147--91Chr03:11040842..11040866 (25 bp)
ATTCGGTTGTAGTACTAGCCTTCAC
LOC_Os03g19670
Os.51091.1.S1_at--170--4451Chr03:11040859..11040883 (25 bp)
GCCTTCACGGGCTAGGAGTAGTAGA
LOC_Os03g19670
Os.51091.1.S1_at--510--4871Chr03:11040900..11040924 (25 bp)
GCTATTGATTTCTGTCCGTTTGGAC
LOC_Os03g19670
Os.51091.1.S1_at--279--591Chr03:11040965..11040989 (25 bp)
ATGCCATTGATGGACTGTTCGATCT
LOC_Os03g19670
Target Sequence 
AACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCAAGTTCCCTAA
CCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCC
TCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCG
TGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTA
CGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGG
ACATCTTCCCGATCAACGTGCGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTA
GGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTTTGGGGAGACGCACTGATGGA
TATGTGCATGTGATGCCATTGATGGACTGTTCGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis