Browse Element(s) Details


Os.51094.1.A1_at

Description gb:AK060634.1
DB_XREF= gi:32970652
TID=Os.51094.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B10, full insert sequence.
FL= gb:AK060634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3580010/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein
LOC_Os04g35770Os.52558.1.S1_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35770OsAffx.26346.1.S1_s_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35780Os.6341.1.S1_at11/114+21611821..21614243cytoplasm protein, putative, expressed
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g35810OsAffx.26347.1.S1_at11/114+21639715..21641126hypothetical protein
LOC_Os04g35820NANA4+21642556..21642867hypothetical protein
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein
LOC_Os04g35840Os.9654.2.S1_x_at11/114+21655131..21660732T-complex protein 11 containing protein, expressed
LOC_Os04g35840Os.9654.1.S1_at9/114+21655131..21660732T-complex protein 11 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51094.1.A1_at--762--6511Chr04:21633197..21633221 (25 bp)
GATATTCCCATGCAATACCCTGATA
LOC_Os04g35800
Os.51094.1.A1_at--105--6511Chr04:21632617..21632636 (20 bp)
GATATGGTTTACATGCCACCACCAG
LOC_Os04g35800
Os.51094.1.A1_at--650--5091Chr04:21632593..21632617 (25 bp)
GCACCCCTTGGAGTACCTATGATGA
LOC_Os04g35800
Os.51094.1.A1_at--896--5031Chr04:21632299..21632323 (25 bp)
GCAGATTTGCACACCCGGATTTGAA
LOC_Os04g35800
Os.51094.1.A1_at--501--311Chr04:21632175..21632199 (25 bp)
ATACCCAAGTTGAAGTTTGCCGTGA
LOC_Os04g35800
Os.51094.1.A1_at--1129--8051Chr04:21632140..21632164 (25 bp)
GGAGAATGCAATCGACCTGCCTGTC
LOC_Os04g35800
Os.51094.1.A1_at--708--6471NONE
GATAAATATTGAGTGCCCTGCCCTG
NONE
Os.51094.1.A1_at--466--9111Chr04:21630997..21631021 (25 bp)
TGCTGCCAAAGAGCTGCTGCGCTGG
LOC_Os04g35800
Os.51094.1.A1_at--410--3911Chr04:21630976..21631000 (25 bp)
CTGGCTGTTGTGCTGCTTGCTAAGA
LOC_Os04g35800
Os.51094.1.A1_at--268--7911Chr04:21630880..21630904 (25 bp)
GGTTGCTTAAACTTGACTCAGTTCT
LOC_Os04g35800
Os.51094.1.A1_at--257--6131Chr04:21630829..21630853 (25 bp)
GAGTGGTTGTGTACTAGCCTTCATA
LOC_Os04g35800
Target Sequence 
GATATTCCCATGCAATACCCTGATATGGTTTACATGCCACCACCAGCACCCCTTGGAGTACCTATGATGATGCCTCCCCC
TTCAGCCCCTGCAGCCTTTTCTGGTAATAACTACGGAGTGGAAGTTTGCAGGGACTACTTGAAGAACATGTGTAATAGAG
AATCCTGCAGATTTGCACACCCGGATTTGAATAATGAGGTGATGAATACCCAAGTTGAAGTTTGCCGTGATTTTAAGCGA
GGAGAATGCAATCGACCTGCCTGTCGCTTTTACCATCCACCTGCAAGCTCAAATTCTATTGGATAAATATTGAGTGCCCT
GCCCTGCTGCCGCTGCTACCGCTCTGCTGCTGCTAAATCTGCTACTGCTGCCAAAGAGCTGCTGCGCTGGCTGTTGTGCT
GCTTGCTAAGATGTCATAGACAATGAAAAGCCTAAAAAAGTTCTATGTAACAGAAGAGATTATCATCGTGTGATGTTTCA
GAGGTTGCTTAAACTTGACTCAGTTCTTTCTCTCTTTAAAAANGGGGATTGCACGAGTGGTTGTGTACTAGCCTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51094.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis