Browse Element(s) Details


Os.51112.1.S1_at

Description gb:AK060709.1
DB_XREF= gi:32970727
TID=Os.51112.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H10, full insert sequence.
FL= gb:AK060709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5086011/11cytokinin receptor CRE1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50820OsAffx.25670.1.S1_at11/113+28977485..28979935Cytochrome b561 family protein, expressed
LOC_Os03g50830OsAffx.13449.1.S1_at11/113+28980747..28981421hypothetical protein
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50870Os.16884.1.S1_at10/113+29014165..29016831expressed protein
LOC_Os03g50880Os.11814.1.S1_at9/113+29016928..29020662Anthranilate synthase component II, putative, expressed
LOC_Os03g50890Os.3420.1.S1_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50890Os.3420.1.S1_s_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50900Os.51810.1.S1_at11/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50900Os.19803.2.S1_at1/113+29027553..29030470transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0004673molecular_functionprotein histidine kinase activity
GO:0009884molecular_functioncytokinin receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51112.1.S1_at--447--7031Chr03:29007142..29007166 (25 bp)
GTACAGAAGTTCTTGGGCCCATGCG
LOC_Os03g50860
Os.51112.1.S1_at--1008--8951Chr03:29007175..29007199 (25 bp)
TGACACCAACCGATGCATTCTGCTG
LOC_Os03g50860
Os.51112.1.S1_at--598--3331Chr03:29007224..29007248 (25 bp)
CACTGACTGTGAACTGAGGCGGCTA
LOC_Os03g50860
Os.51112.1.S1_at--280--911Chr03:29007240..29007264 (25 bp)
AGGCGGCTAAAATTCTTCTCCATTT
LOC_Os03g50860
Os.51112.1.S1_at--129--6011Chr03:29007297..29007321 (25 bp)
GAGAGCCTGCACTCAAGGCGACATT
LOC_Os03g50860
Os.51112.1.S1_at--596--7971Chr03:29007331..29007355 (25 bp)
GGATCGGAGCCTTCATTGTGTACAT
LOC_Os03g50860
Os.51112.1.S1_at--776--1191Chr03:29007409..29007433 (25 bp)
AGTTTTAGGGTGACATGTCCGGCCT
LOC_Os03g50860
Os.51112.1.S1_at--240--10431Chr03:29007438..29007462 (25 bp)
TTATCGGAGCCACAGGTGTGTTGCT
LOC_Os03g50860
Os.51112.1.S1_at--1106--6651Chr03:29007457..29007481 (25 bp)
GTTGCTGGGCTATTGGAATCTTGAG
LOC_Os03g50860
Os.51112.1.S1_at--335--8751Chr03:29007496..29007520 (25 bp)
TGTACAGCTCCCACGATTTTTCGGC
LOC_Os03g50860
Os.51112.1.S1_at--207--4791Chr03:29007519..29007543 (25 bp)
GCTCCAGCCCACTGTTGACAGAAGA
LOC_Os03g50860
Target Sequence 
GTACAGAAGTTCTTGGGCCCATGCGTTTCCAGCTGACACCAACCGATGCATTCTGCTGTACACCAAGAGAGTAAAGAATG
AGCACTGACTGTGAACTGAGGCGGCTAAAATTCTTCTCCATTTTGTTGCTCTTCAACAGAGGATGCGATCTGAATGAGAG
CCTGCACTCAAGGCGACATTGCACAGAAAGGATCGGAGCCTTCATTGTGTACATGTATTTTTATCGGCAGAGACCAAGAG
CTATAGTTTTAAGCTAGGAGAAGCATAAGTTTTAGGGTGACATGTCCGGCCTCCTGTTATCGGAGCCACAGGTGTGTTGC
TGGGCTATTGGAATCTTGAGCAATTTTTTTTTCCTGTACAGCTCCCACGATTTTTCGGCTCCAGCCCACTGTTGACAGAA
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis