Browse Element(s) Details


Os.51144.1.S1_at

Description gb:AK061122.1
DB_XREF= gi:32971140
TID=Os.51144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence.
FL= gb:AK061122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4721011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47170OsAffx.16742.1.S1_at11/117+28195151..28196385F-box domain containing protein
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51144.1.S1_at--290--2531Chr07:28221384..28221408 (25 bp)
AACTACGACTCCTACGGTGAGCTAT
LOC_Os07g47210
Os.51144.1.S1_at--1093--9991Chr07:28221352..28221376 (25 bp)
TAGCTGCTCAACTTTCATCGCCATA
LOC_Os07g47210
Os.51144.1.S1_at--1037--4431Chr07:28221333..28221357 (25 bp)
GCCATAGCTTTCGACGAGTTGATCG
LOC_Os07g47210
Os.51144.1.S1_at--658--3951Chr07:28221169..28221193 (25 bp)
CGGAAGAGCCACGTGTTCTGGGACC
LOC_Os07g47210
Os.51144.1.S1_at--156--7771Chr07:28221116..28221140 (25 bp)
GGTGATGGCCAAGTACATCGTCGAC
LOC_Os07g47210
Os.51144.1.S1_at--371--2151Chr07:28221087..28221111 (25 bp)
ACAGCAAGTACATCTCGCCGATGAA
LOC_Os07g47210
Os.51144.1.S1_at--1092--9971Chr07:28221040..28221064 (25 bp)
TAGCCTTACTAGCACTCCATTGTTA
LOC_Os07g47210
Os.51144.1.S1_at--263--5111Chr07:28221029..28221053 (25 bp)
GCACTCCATTGTTAATTACCGCGAT
LOC_Os07g47210
Os.51144.1.S1_at--207--10471Chr07:28221014..28221038 (25 bp)
TTACCGCGATTGATGTCGAGCTTGC
LOC_Os07g47210
Os.51144.1.S1_at--1044--7211Chr07:28221000..28221024 (25 bp)
GTCGAGCTTGCATTTTGATTCGCAT
LOC_Os07g47210
Os.51144.1.S1_at--217--8591Chr07:28220953..28220977 (25 bp)
TGGTGTTTTTGCACGCGAATTGCGA
LOC_Os07g47210
Target Sequence 
AACTACGACTCCTACGGTGAGCTATAGCTAGCTAGCTGCTCAACTTTCATCGCCATAGCTTTCGACGAGTTGATCGATCG
ATCGATCGATCTCAAGGTAGAAGACGAGGTTGGGTTTTTGCAGGGTTCGAGACGGCGAGCATGGCGTGCTGCGGGAACGG
CGGGACGTACGACGGGATGGTGCCGTGCGGGCCGGCGTCGAGCATGTGCGGCGACCGGAAGAGCCACGTGTTCTGGGACC
CGTACCACCCCAGCGAGGCGGCGAACCTGGTGATGGCCAAGTACATCGTCGACGGCGACAGCAAGTACATCTCGCCGATG
AACCTCCGCAAGCTGTTCTCCCTCTAGCCTTACTAGCACTCCATTGTTAATTACCGCGATTGATGTCGAGCTTGCATTTT
GATTCGCATGTGTAATTGTATCTGATGCTTTTGGTGTTTTTGCACGCGAATTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis