Browse Element(s) Details


Os.51193.1.S1_at

Description gb:AK061488.1
DB_XREF= gi:32971506
TID=Os.51193.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A09, full insert sequence.
FL= gb:AK061488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5564011/11uncharacterized plant-specific domain TIGR01627 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51193.1.S1_at--480--7571Chr04:32900171..32900195 (25 bp)
GGGCGGATGCCGTCCATCTTCACCA
LOC_Os04g55640
Os.51193.1.S1_at--316--5771Chr04:32900243..32900267 (25 bp)
GACGTTCTGGTCCACGACTTCCAGT
LOC_Os04g55640
Os.51193.1.S1_at--560--1231Chr04:32900265..32900289 (25 bp)
AGTTCGAGCTGGAGCAGGTCCTCAG
LOC_Os04g55640
Os.51193.1.S1_at--592--1611Chr04:32900271..32900295 (25 bp)
AGCTGGAGCAGGTCCTCAGCAAGGA
LOC_Os04g55640
Os.51193.1.S1_at--5--6711Chr04:32900296..32900320 (25 bp)
GTTCCTCTGCGACGAGAACCGCGTC
LOC_Os04g55640
Os.51193.1.S1_at--826--4471Chr04:32900432..32900456 (25 bp)
TCCGGCAAGTAAAAACCTGGCCAAG
LOC_Os04g55640
Os.51193.1.S1_at--28--1771Chr04:32900446..32900470 (25 bp)
ACCTGGCCAAGAATTACTCTTCCCT
LOC_Os04g55640
Os.51193.1.S1_at--682--4291Chr04:32900500..32900524 (25 bp)
CCTCTCACTTGTTAATTATTTCCTG
LOC_Os04g55640
Os.51193.1.S1_at--185--3631Chr04:32900507..32900531 (25 bp)
CTTGTTAATTATTTCCTGTTACATA
LOC_Os04g55640
Os.51193.1.S1_at--882--7611Chr04:32900554..32900578 (25 bp)
GGGACAATAATTTGTAACACAGTGA
LOC_Os04g55640
Os.51193.1.S1_at--764--6291Chr04:32900577..32900601 (25 bp)
GATGATATCATTGCATCAATAGAGA
LOC_Os04g55640
Target Sequence 
GGGCGGATGCCGTCCATCTTCACCACCGCCGTCCTCGCGCGCACCGGCGCCACCGCCGCCAAGGGCCCCACCGACGTTCT
GGTCCACGACTTCCAGTTCGAGCTGGAGCAGGTCCTCAGCAAGGAGTTCCTCTGCGACGAGAACCGCGTCGCCGGCAGCG
GCACGCCGTCGCTCGGCCACTTCGTCGTCCGCCCAGACGGCCGGCGCGACGCCTTCTGCTCCGGCCAAGACAGCACGGCG
GCGGGCACATCGTCGGAGAAGTCCGGCAAGTAAAAACCTGGCCAAGAATTACTCTTCCCTCCTCTGCTAATTTTTTCTCT
CTCTCCTCTCCTCTCACTTGTTAATTATTTCCTGTTACATATATTTTTTTTACTGTTTTTTGGGGGACAATAATTTGTAA
CACAGTGATGATATCATTGCATCAATAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis