Browse Element(s) Details


Os.51258.1.S1_at

Description gb:AK062350.1
DB_XREF= gi:32972368
TID=Os.51258.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G03, full insert sequence.
FL= gb:AK062350.1 gb:AK105873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0325011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03220Os.51980.1.S1_at11/112+1283155..1288182expressed protein
LOC_Os02g03220Os.49499.1.S1_at2/112+1283155..1288182expressed protein
LOC_Os02g03230Os.11750.1.A1_at11/112+1288992..1292410Nodule membrane protein, putative, expressed
LOC_Os02g03240Os.41695.3.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.2.S1_x_at5/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.5.S1_x_at2/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03240Os.41695.4.S1_x_at1/112+1295233..1299527transposon protein, putative, Mutator sub-class
LOC_Os02g03250Os.51258.1.S1_at11/112+1302273..1304317expressed protein
LOC_Os02g03260Os.8913.1.S1_at11/112+1304834..1309823homoaconitate hydratase family protein, expressed
LOC_Os02g03270Os.5123.1.S1_at11/112+1313981..1318881AT hook motif family protein, expressed
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51258.1.S1_at--824--6971Chr02:1303414..1303438 (25 bp)
GTACGGTCGGATATGGCGTCTTCAA
LOC_Os02g03250
Os.51258.1.S1_at--741--5691Chr02:1303868..1303892 (25 bp)
GACTATTACCATCGTAGCTGCACAA
LOC_Os02g03250
Os.51258.1.S1_at--617--5631Chr02:1303893..1303917 (25 bp)
GACACCAGTCAGAGGCTTTGCGCAA
LOC_Os02g03250
Os.51258.1.S1_at--958--6071Chr02:1303988..1304012 (25 bp)
GAGTTTCCCGACATGATTTCGCAGA
LOC_Os02g03250
Os.51258.1.S1_at--1030--191Chr02:1304003..1304027 (25 bp)
ATTTCGCAGACCATGCATATCGTGG
LOC_Os02g03250
Os.51258.1.S1_at--133--8291Chr02:1304104..1304128 (25 bp)
GGCATCACACAAATCAGCGGCTGGG
LOC_Os02g03250
Os.51258.1.S1_at--622--5391Chr02:1304129..1304153 (25 bp)
GAAGCTACGAGCTCTGGAACTCCCT
LOC_Os02g03250
Os.51258.1.S1_at--165--7191Chr02:1304154..1304178 (25 bp)
GTCTGTCATCAGTGTCTAGTTCGTC
LOC_Os02g03250
Os.51258.1.S1_at--508--10051Chr02:1304170..1304194 (25 bp)
TAGTTCGTCTCTAGCTAGTTCTCTT
LOC_Os02g03250
Os.51258.1.S1_at--277--6731Chr02:1304187..1304211 (25 bp)
GTTCTCTTGTACTTCTTGACTTGTT
LOC_Os02g03250
Os.51258.1.S1_at--253--51Chr02:1304212..1304236 (25 bp)
ATTGTTGTTCAGGTCATCTAACTCC
LOC_Os02g03250
Target Sequence 
GTACGGTCGGATATGGCGTCTTCAAGTACTTCGAAGGCGAGAAAAGCAATAGCTAGATGGCTGCACAAAGGTGAGTAAAA
GAATGAGGCGGGTTGAAACACGATTAGAGAGTAAATGGTTCATATTTGCCATGGTTAGAGTATTGACTATTACCATCGTA
GCTGCACAAGACACCAGTCAGAGGCTTTGCGCAAATTGCAGTGCGACTGTGCAAATTACAAATTGCGCAATCATAAGCAA
ATGGAAAAAAAAAACTCAAATCTAGAGTTTCCCGACATGATTTCGCAGACCATGCATATCGTGGTCAAGACAAGAGGATC
ATTGATAAATNCAGTTTCTTGAAGCAAGCAGGTGCAGAGAAGTTGTACCCTATTTTATGAGGCATCACACAAATCAGCGG
CTGGGGAAGCTACGAGCTCTGGAACTCCCTGTCTGTCATCAGTGTCTAGTTCGTCTCTAGCTAGTTCTCTTGTACTTCTT
GACTTGTTATTGTTGTTCAGGTCATCTAACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis