Browse Element(s) Details


Os.5129.2.S1_a_at

Description gb:AK100596.1
DB_XREF= gi:32985805
TID=Os.5129.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106P10, full insert sequence.
FL= gb:AK100596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0768011/11Cytochrome P450 97B2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07650Os.8770.1.S1_at11/112+3971428..3975143zinc-binding protein, putative, expressed
LOC_Os02g07659NANA2+3980820..3981482NA
LOC_Os02g07670Os.23828.1.S1_at11/112+3992040..3995073urease accessory family protein, putative, expressed
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009974molecular_functionepsilon hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5129.2.S1_a_at--821--10271Chr02:4001570..4001594 (25 bp)
TTTGCACTCCTCGAGTCGACAGTAG
LOC_Os02g07680
Os.5129.2.S1_a_at--1150--4251Chr02:4001596..4001620 (25 bp)
CCTGGCCCTGCTATTGCAAAAGTTT
LOC_Os02g07680
Os.5129.2.S1_a_at--785--8071Chr02:4001626..4001650 (25 bp)
GGAGCTGCGAGGATCACCCGATGAA
LOC_Os02g07680
Os.5129.2.S1_a_at--929--5651Chr02:4001662..4001686 (25 bp)
GACAGGCGCAACAATTCACACGAAG
LOC_Os02g07680
Os.5129.2.S1_a_at--1044--1451Chr02:4001711..4001735 (25 bp)
AGAAGGACCTGATCATCCACCAGTT
LOC_Os02g07680
Os.5129.2.S1_a_at--394--7031Chr02:4002334..4002358 (25 bp)
GTAAGTAAAGCCAGCTACTCCTACT
LOC_Os02g07680
Os.5129.2.S1_a_at--861--9871Chr02:4002355..4002379 (25 bp)
TACTCCTTAGTTCTTTTTTCGCTCA
LOC_Os02g07680
Os.5129.2.S1_a_at--138--7311Chr02:4002440..4002464 (25 bp)
GTGCGTGCCTCTTTGACGGCGAAAA
LOC_Os02g07680
Os.5129.2.S1_a_at--1097--6051Chr02:4002494..4002518 (25 bp)
GAGTTGTTACTTCATCTCAGGCTGA
LOC_Os02g07680
Os.5129.2.S1_a_at--622--5531Chr02:4002517..4002541 (25 bp)
GAAACAGCACGTTTTTGCGACCTTT
LOC_Os02g07680
Os.5129.2.S1_a_at--151--7831Chr02:4002546..4002570 (25 bp)
GGTCAGCAAATTCGCTGTCGGCCAA
LOC_Os02g07680
Target Sequence 
TTTGCACTCCTCGAGTCGACAGTAGCCCTGGCCCTGCTATTGCAAAAGTTTGATGTGGAGCTGCGAGGATCACCCGATGA
AGTGGAGATGGTGACAGGCGCAACAATTCACACGAAGAGCGGGTTATGGTGCAGAGTGAGGAGAAGGACCTGATCATCCA
CCAGTTGGCACCAAAAGCTGTGCTTGTGCCGTGCCGCAGCGGGATGCATGCAGTGCAGGAAACAAGAAGCACACAGGAAT
AAATGCATCGATGCAGACAACAACCAATACAAGGGTAAGTAAAGCCAGCTACTCCTACTCCTTAGTTCTTTTTTCGCTCA
TGATGTGATGGTGTATAGAAGTATATACTATTCGATTATTTGTACGATGCATACGCATCTGTGCGTGCCTCTTTGACGGC
GAAAAATCGTTGGGGTTGAACTGGAAATTGTGCTGAGTTGTTACTTCATCTCAGGCTGAAACAGCACGTTTTTGCGACCT
TTTTGTGGTCAGCAAATTCGCTGTCGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5129.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis