Browse Element(s) Details


Os.51310.1.S1_at

Description gb:AK101039.1
DB_XREF= gi:32986248
TID=Os.51310.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51310 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000K11, full insert sequence.
FL= gb:AK101039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3899011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38960Os.9684.1.S1_at11/116+23118062..23121172expressed protein
LOC_Os06g38970OsAffx.5056.1.S1_x_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.12667.1.S1_at11/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38970Os.13590.1.S1_x_at1/116+23130664..23135276Leucine Rich Repeat family protein, expressed
LOC_Os06g38980Os.51905.1.S1_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38980OsAffx.5057.1.S1_s_at11/116+23135427..23139967polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000OsAffx.15829.1.S1_at11/116+23155212..23155634hypothetical protein
LOC_Os06g39010OsAffx.15830.1.S1_at11/116+23156564..23157463hypothetical protein
LOC_Os06g39020NANA6+23164710..23169275retrotransposon protein, putative, unclassified
LOC_Os06g39030OsAffx.28000.1.A1_at11/116+23171472..23172146hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51310.1.S1_at--612--5911Chr06:23144171..23144195 (25 bp)
GAGCTACGAGCCAGCGGTGAACATC
LOC_Os06g38990
Os.51310.1.S1_at--1003--8971Chr06:23144154..23144178 (25 bp)
TGAACATCCTGGACCCGAAGCTGCG
LOC_Os06g38990
Os.51310.1.S1_at--928--7651Chr06:23144086..23144110 (25 bp)
GGGATCGCCATCTTCTGCGTGAACC
LOC_Os06g38990
Os.51310.1.S1_at--575--1511Chr06:23143971..23143995 (25 bp)
AGCAGCCGCTCATCAAGCCCGGGAG
LOC_Os06g38990
Os.51310.1.S1_at--849--4531Chr06:23143955..23143979 (25 bp)
GCCCGGGAGCCAGCAAGGTTGACAT
LOC_Os06g38990
Os.51310.1.S1_at--845--5491Chr06:23143914..23143938 (25 bp)
GAACATGAACATTGCTGCTGGTGTA
LOC_Os06g38990
Os.51310.1.S1_at--353--1531Chr06:23143890..23143914 (25 bp)
AGCAGTTGATTCAGTGGCTCAGCAA
LOC_Os06g38990
Os.51310.1.S1_at--1092--6531Chr06:23143849..23143873 (25 bp)
GATTTTGATAAGATGCAGCCTAGCT
LOC_Os06g38990
Os.51310.1.S1_at--623--631Chr06:23143837..23143861 (25 bp)
ATGCAGCCTAGCTTAGCTTGGGTTA
LOC_Os06g38990
Os.51310.1.S1_at--416--7031Chr06:23143789..23143813 (25 bp)
GTACAGCTCCAAATGGCGTTGCGTT
LOC_Os06g38990
Os.51310.1.S1_at--863--6671Chr06:23143772..23143796 (25 bp)
GTTGCGTTGCAGCTCATTTTGGTGA
LOC_Os06g38990
Target Sequence 
GAGCTACGAGCCAGCGGTGAACATCCTGGACCCGAAGCTGCGCGGCATGCCGGACCAGCTGGTCCAGGAGATGCTGCAGA
CGCTGGGGATCGCCATCTTCTGCGTGAACCCGGCGCCCGCGGAGCGGCCCACCATGAAGGAGGTGGTGGCCTTCCTCAAG
GAGGTGAAGTGCTCTCCCGAGGAGTGGGGGAAGATCTCCCAGCAGCCGCTCATCAAGCCCGGGAGCCAGCAAGGTTGACA
TGAACATCAAGAACATGGAACATGAACATTGCTGCTGGTGTAGCAGTTGATTCAGTGGCTCAGCAAGGGGTTCAAGGAGT
AGGATTTTGATAAGATGCAGCCTAGCTTAGCTTGGGTTAGGGGGGTGGAAAAAAAATTTCTTGTACAGCTCCAAATGGCG
TTGCGTTGCAGCTCATTTTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis