Browse Element(s) Details


Os.51354.1.S1_at

Description gb:AK062630.1
DB_XREF= gi:32972648
TID=Os.51354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-C07, full insert sequence.
FL= gb:AK062630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2607011/11expressed protein
LOC_Os03g525942/11NOT2/NOT3/NOT5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51354.1.S1_at--484--9911Chr01:14751945..14751969 (25 bp)
TACTGCTGCTCGGTCAGCTGGTGAC
LOC_Os01g26070
Os.51354.1.S1_at--203--9331Chr01:14752042..14752066 (25 bp)
TCGCGCCGGCAGAGAGTTCGAACGA
LOC_Os01g26070
Os.51354.1.S1_at--1075--1851Chr01:14752063..14752087 (25 bp)
ACGACGGCGTTGAGAGGAACAGCAT
LOC_Os01g26070
Os.51354.1.S1_at--950--471Chr01:14752180..14752204 (25 bp)
ATCTGGAGCTTCTGGTAGTCGGTAG
LOC_Os01g26070
Os.51354.1.S1_at--363--511Chr01:14752215..14752239 (25 bp)
ATCGACGGGACCCAAGTCATGGCAA
LOC_Os01g26070
Os.51354.1.S1_at--746--5811Chr01:14752223..14752247 (25 bp)
GACCCAAGTCATGGCAAGATCGATT
LOC_Os01g26070
Os.51354.1.S1_at--482--10372Chr01:14752268..14752292 (25 bp)
TTTTTTCTGAATCATATGCGGCATC
LOC_Os01g26070
Os.51354.1.S1_at--785--616Chr12:24958588..24958610 (23 bp)
ATGCGGCATCATATTGTAGTTCTTC
NONE
Os.51354.1.S1_at--879--8751Chr01:14752297..14752321 (25 bp)
TGTAGTTCTTCATCCGACTTACTTC
LOC_Os01g26070
Os.51354.1.S1_at--664--5692Chr03:23662145..23662170 (25 bp)
GACTTACTTCGATTCATTGATCTTG
NONE
Os.51354.1.S1_at--1016--6911Chr01:14752336..14752360 (25 bp)
GTATGGAGTACTTATTTTTGTGTGA
LOC_Os01g26070
Target Sequence 
TACTGCTGCTCGGTCAGCTGGTGACTGGTGAGCGGCGTCAGGAGGAGGATGAGGAGGAGGAGGAGGGGGGGGGGAGAGCG
CCGACGAGGGTAGGCTCGCGCCGGCAGAGAGTTCGAACGACGGCGTTGAGAGGAACAGCATGGCCGGCGCGGCGGCGGCA
GGGTGGGCCCTGCCTGGGATTCCTCTGCTTTGGTGGCTCGCGTCATCGTCGTATCCGCACCCCGGTGGATGGGATCTGGA
GCTTCTGGTAGTCGGTAGAATGGTGGAGATCGACGGGACCCAAGTCATGGCAAGATCGATTTGATTTGATTTGCTTCTTT
TTTTTTTCTGAATCATATGCGGCATCATATTGTAGTTCTTCATCCGACTTACTTCGATTCATTGATCTTGTATGGAGTAC
TTATTTTTGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis