Browse Element(s) Details


Os.51462.1.S1_at

Description gb:AK062860.1
DB_XREF= gi:32972878
TID=Os.51462.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-B01, full insert sequence.
FL= gb:AK062860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4003011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative
LOC_Os10g40000NANA10+21097385..21098658short-chain dehydrogenase/reductase, putative, expressed
LOC_Os10g40010NANA10+21101773..21102135hypothetical protein
LOC_Os10g40020OsAffx.18586.1.S1_at9/1110+21104533..21109608NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g40030Os.51462.1.S1_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.2.S1_x_at11/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40030Os.19752.1.S1_at5/1110+21110581..21113957oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os10g40040Os.3280.1.S1_at11/1110+21114647..21115801expressed protein
LOC_Os10g40050Os.3277.1.S1_a_at11/1110+21116194..21123894TPR Domain containing protein, expressed
LOC_Os10g40060Os.46130.1.S1_a_at11/1110+21124348..21130057protein kinase family protein, putative, expressed
LOC_Os10g40070OsAffx.7927.1.S1_at11/1110+21130337..21130941expressed protein
LOC_Os10g40080OsAffx.31578.2.S1_at11/1110+21132668..21133649hypothetical protein
LOC_Os10g40090Os.12697.1.S1_at11/1110+21135323..21137158Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40100Os.3287.1.S1_a_at10/1110+21137938..21143082U-box domain containing protein, expressed
LOC_Os10g40100Os.15454.1.S2_x_at1/1110+21137938..21143082U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009706cellular_componentchloroplast inner membrane
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51462.1.S1_at--1149--5291Chr10:21113493..21113517 (25 bp)
GAAGGTTTTCTCTACAAGCTTCCCT
LOC_Os10g40030
Os.51462.1.S1_at--490--10631Chr10:21113469..21113493 (25 bp)
TTCGATCGTGTAGCCAGCATCTGTA
LOC_Os10g40030
Os.51462.1.S1_at--379--1511Chr10:21113454..21113478 (25 bp)
AGCATCTGTAGGCTATAGCTCGTTA
LOC_Os10g40030
Os.51462.1.S1_at--41--7331Chr10:21113417..21113441 (25 bp)
GTGCTAGCTCGTTTATTGGTTCTTT
LOC_Os10g40030
Os.51462.1.S1_at--857--8771Chr10:21113388..21113412 (25 bp)
TGTTTCCTGTTAGTCAGTTTCTCCT
LOC_Os10g40030
Os.51462.1.S1_at--797--6811Chr10:21113357..21113381 (25 bp)
GTTTTTTAGCTTGTTCTCTTCTGTT
LOC_Os10g40030
Os.51462.1.S1_at--374--9571Chr10:21113341..21113365 (25 bp)
TCTTCTGTTTTCCAGTCGAGTGCAT
LOC_Os10g40030
Os.51462.1.S1_at--889--6111Chr10:21113324..21113348 (25 bp)
GAGTGCATGACTGCGATTTGCTCGG
LOC_Os10g40030
Os.51462.1.S1_at--307--211Chr10:21113309..21113333 (25 bp)
ATTTGCTCGGTCGTGCACATGTCGA
LOC_Os10g40030
Os.51462.1.S1_at--812--2111Chr10:21113293..21113317 (25 bp)
ACATGTCGAGCTTGACGTGCGCTTA
LOC_Os10g40030
Os.51462.1.S1_at--524--9291Chr10:21113239..21113263 (25 bp)
TCCCACGTTTTTACTTTCTGTACTG
LOC_Os10g40030
Target Sequence 
GAAGGTTTTCTCTACAAGCTTCCCTTCGATCGTGTAGCCAGCATCTGTAGGCTATAGCTCGTTAGCTGTAAAACTTGTGC
TAGCTCGTTTATTGGTTCTTTCATTTGTTTCCTGTTAGTCAGTTTCTCCTCCCCCAGTTTTTTAGCTTGTTCTCTTCTGT
TTTCCAGTCGAGTGCATGACTGCGATTTGCTCGGTCGTGCACATGTCGAGCTTGACGTGCGCTTAGTCCGCACGGAGCGC
GTCGCGCGGCTTGATCCCACGTTTTTACTTTCTGTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis