Browse Element(s) Details


Os.51477.1.S1_at

Description gb:AK062910.1
DB_XREF= gi:32972928
TID=Os.51477.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G05, full insert sequence.
FL= gb:AK062910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4686011/11Oligopeptide transporter 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein
LOC_Os02g46830Os.8670.1.S1_at2/112+28572644..28573044hypothetical protein
LOC_Os02g46850Os.18232.1.S1_at10/112+28575696..28578550Oligopeptide transporter 4, putative, expressed
LOC_Os02g46860Os.51477.1.S1_at11/112+28581077..28582096Oligopeptide transporter 4, putative, expressed
LOC_Os02g46870NANA2+28584220..28587025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46880OsAffx.22848.3.S1_x_at3/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_x_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46890NANA2+28599792..28602017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46900NANA2+28603749..28606697transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51477.1.S1_at--638--4131Chr02:28581686..28581710 (25 bp)
CGCTCATCGTGACGCAGATCACGGT
LOC_Os02g46860
Os.51477.1.S1_at--833--7631Chr02:28581208..28581232 (25 bp)
GGGACGCTCGTCCAGGTCTCGCTCT
LOC_Os02g46860
Os.51477.1.S1_at--481--1031Chr02:28581195..28581219 (25 bp)
AGGTCTCGCTCTTCCGGTGAGTAGC
LOC_Os02g46860
Os.51477.1.S1_at--621--4811Chr02:28581188..28581212 (25 bp)
GCTCTTCCGGTGAGTAGCTACTAGC
LOC_Os02g46860
Os.51477.1.S1_at--328--7391Chr02:28581179..28581203 (25 bp)
GTGAGTAGCTACTAGCTCGCTTCAC
LOC_Os02g46860
Os.51477.1.S1_at--76--10011Chr02:28581174..28581198 (25 bp)
TAGCTACTAGCTCGCTTCACCTTCA
LOC_Os02g46860
Os.51477.1.S1_at--536--9271Chr02:28581145..28581169 (25 bp)
TCCTGCTCGCGTTCTACTTCAGTTT
LOC_Os02g46860
Os.51477.1.S1_at--1078--9311Chr02:28581139..28581163 (25 bp)
TCGCGTTCTACTTCAGTTTCTTCTC
LOC_Os02g46860
Os.51477.1.S1_at--646--9491Chr02:28581118..28581142 (25 bp)
TCTCCTCTCTTTGTTAATTCTTCTC
LOC_Os02g46860
Os.51477.1.S1_at--682--6751Chr02:28581106..28581130 (25 bp)
GTTAATTCTTCTCAACAGAAACGGT
LOC_Os02g46860
Os.51477.1.S1_at--595--10571Chr02:28581098..28581122 (25 bp)
TTCTCAACAGAAACGGTAGTAGGTT
LOC_Os02g46860
Target Sequence 
CGCTCATCGTGACGCAGATCACGGTGCAGGTGGCGTCGCTGCCGGTGGGCCACTTCCTGGCGCGCGTGCTGCCGCGCCGC
GCGTTCCGCGCCCCCGCGCTGCTCGGCGGCGGCGAGTGGAGCCTCAACCCGGGCCCCTTCAACATGAAGGAGCACGTGCT
CATCTCCATCTTCGCCAACGCCGGCTGCGCCTTCGGCAACGGCAACGCCTACGCCGTCATGATCGTCGACATCATCCGCG
CCTTCTACAAGCGCTCCATCTCCTTCGTCGCCGCCTGGCTCCTCATCATCACCACCCAGGTGCTTGGGTACGGGTGGGCG
GGGCTGATGCGCAAGTTCGTGGTGGAGCCGGCGCACATGTGGTGGCCGGGGACGCTCGTCCAGGTCTCGCTCTTCCGGTG
AGTAGCTACTAGCTCGCTTCACCTTCACTGCTCCTGCTCGCGTTCTACTTCAGTTTCTTCTCCTCTCTTTGTTAATTCTT
CTCAACAGAAACGGTAGTAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis