Browse Element(s) Details


Os.51539.1.S1_at

Description gb:AK063024.1
DB_XREF= gi:32973042
TID=Os.51539.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51539 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B08, full insert sequence.
FL= gb:AK063024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1025411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10220Os.51134.2.S1_x_at2/117+5489010..5489558glycosyltransferase family protein, putative
LOC_Os07g10230OsAffx.28379.1.S1_at11/117+5490306..5491157hydroquinone glucosyltransferase, putative, expressed
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein
LOC_Os07g10260NANA7+5509781..5510035hypothetical protein
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein
LOC_Os07g10290OsAffx.23890.3.A1_at2/117+5517853..5518641hypothetical protein
LOC_Os07g10290OsAffx.26617.4.S1_x_at1/117+5517853..5518641hypothetical protein
LOC_Os07g10300Os.10383.1.S1_at11/117+5519909..5524998expressed protein
LOC_Os07g10310OsAffx.28381.1.S1_at11/117+5526553..5527383hypothetical protein
LOC_Os07g10310OsAffx.28385.2.S1_x_at1/117+5526553..5527383hypothetical protein
LOC_Os07g10320OsAffx.28382.1.S1_at11/117+5528953..5529402hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51539.1.S1_at--817--6011Chr07:5505424..5505448 (25 bp)
GAGAGGTGCGGCATTGCATCACATC
LOC_Os07g10254
Os.51539.1.S1_at--1120--4931Chr07:5505434..5505458 (25 bp)
GCATTGCATCACATCGGCATCAGCG
LOC_Os07g10254
Os.51539.1.S1_at--517--10131Chr07:5505526..5505550 (25 bp)
TTCCCGTCCGTTCATCCAGATGGAC
LOC_Os07g10254
Os.51539.1.S1_at--97--571Chr07:5505539..5505563 (25 bp)
ATCCAGATGGACACCGCGGCCGACT
LOC_Os07g10254
Os.51539.1.S1_at--1029--5871Chr07:5505574..5505598 (25 bp)
GAGCGCCAGCCAAATAGTGCGGGTT
LOC_Os07g10254
Os.51539.1.S1_at--824--2091Chr07:5505783..5505807 (25 bp)
ACATCTCCTCTGTCCTTTTGGTGTG
LOC_Os07g10254
Os.51539.1.S1_at--524--10411Chr07:5505798..5505822 (25 bp)
TTTTGGTGTGTCGTCATCCACAACG
LOC_Os07g10254
Os.51539.1.S1_at--321--10431Chr07:5505940..5505964 (25 bp)
TTACCAATGTGAAGCGAACCCTATA
LOC_Os07g10254
Os.51539.1.S1_at--762--4591Chr07:5505953..5505977 (25 bp)
GCGAACCCTATAAGCTACTTCAGTT
LOC_Os07g10254
Os.51539.1.S1_at--644--2031Chr07:5505969..5505993 (25 bp)
ACTTCAGTTTCTTACAGTTTGAGGC
LOC_Os07g10254
Os.51539.1.S1_at--1086--1191Chr07:5505984..5506008 (25 bp)
AGTTTGAGGCAAATAGTGTTTCCAC
LOC_Os07g10254
Target Sequence 
GAGAGGTGCGGCATTGCATCACATCGGCATCAGCGAAAAAATTAGCAGTAAGGTCGTCGCCCCCTCTCCTTCCCTGATCT
CCTCCGCCTCCGCCTCCTTCTCTTCCCGTCCGTTCATCCAGATGGACACCGCGGCCGACTTTGGCACGGCGAGCGCCAGC
CAAATAGTGCGGGTTGCGGAGGTGGCAGTGGCCCCGCTCGTGCGCTCGCTCGAACCGGCCGCTCCACTCCCAACGGCTGT
CGTGCCTCTCCTCTCCCGCCCTAGCGCCGAAGGAGACGGGGAGCTGGGTACCGGTGGGGGCGGCGGAGATGACCTCAACG
GCGTCCTCGCCATGGGCGACGCTCCCGCCATGTCCCCTCACATCTCCTCTGTCCTTTTGGTGTGTCGTCATCCACAACGG
TGGTGCCCGACGAAGAGCTCGAGAAGATAGAGTGAGGTGGAGGAAGTGGGGCCCACTGGAAATGATAAAATGACAAAATT
ATCCCATTGTAATTAAAGGAAAATGAGGGGCTTTGATTACCAATGTGAAGCGAACCCTATAAGCTACTTCAGTTTCTTAC
AGTTTGAGGCAAATAGTGTTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis