Browse Element(s) Details


Os.51554.1.S1_at

Description gb:AK063060.1
DB_XREF= gi:32973078
TID=Os.51554.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F08, full insert sequence.
FL= gb:AK063060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1166010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11620Os.22621.1.S1_at1/1112+6300742..6300951hypothetical protein
LOC_Os12g11630NANA12+6301408..6304663transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11640Os.45976.1.S1_x_at3/1112+6306997..6310707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11650NANA12+6316318..6320934retrotransposon protein, putative, unclassified
LOC_Os12g11660Os.51554.1.S1_at10/1112+6323887..6324535expressed protein
LOC_Os12g11670Os.40360.1.S1_x_at1/1112+6330437..6333049hypothetical protein
LOC_Os12g11680OsAffx.31705.2.S1_at11/1112+6339847..6342846Leucine Rich Repeat family protein
LOC_Os12g11690OsAffx.7559.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.55898.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.51765.1.S1_at9/1112+6343486..6346006expressed protein
LOC_Os12g11700OsAffx.31706.1.S1_at11/1112+6347630..6348766hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51554.1.S1_at--715--4711Chr12:6324118..6324142 (25 bp)
GCTGGAACATGGTGCAAGTGCGTTA
LOC_Os12g11660
Os.51554.1.S1_at--145--3211NONE
CAAGTGCGTTAAAACCAGACCGCGG
NONE
Os.51554.1.S1_at--967--1711Chr12:6324283..6324307 (25 bp)
ACCACCAGTGGTGAGTATAGTGCGG
LOC_Os12g11660
Os.51554.1.S1_at--945--10051Chr12:6324300..6324324 (25 bp)
TAGTGCGGGTGACACTGATCACGAT
LOC_Os12g11660
Os.51554.1.S1_at--939--371Chr12:6324317..6324341 (25 bp)
ATCACGATAAGCACACGTACTATAC
LOC_Os12g11660
Os.51554.1.S1_at--1090--2251Chr12:6324360..6324384 (25 bp)
AAATACATAGGCACATCTGCGAATA
LOC_Os12g11660
Os.51554.1.S1_at--709--4591Chr12:6324378..6324402 (25 bp)
GCGAATAAATGTACTCGATCGCTCT
LOC_Os12g11660
Os.51554.1.S1_at--408--9491Chr12:6324406..6324430 (25 bp)
TCTCCTGGATAATACTCCCTCTATC
LOC_Os12g11660
Os.51554.1.S1_at--869--5211Chr12:6324434..6324458 (25 bp)
GAATATAGCAACCTAAGCCATCCTA
LOC_Os12g11660
Os.51554.1.S1_at--702--2631Chr12:6324443..6324467 (25 bp)
AACCTAAGCCATCCTAGGTTGCTAT
LOC_Os12g11660
Os.51554.1.S1_at--504--8012Chr12:6324478..6324502 (25 bp)
GGAGGGAGTATATCCCTCCGTTAAG
LOC_Os12g11660
Target Sequence 
GCTGGAACATGGTGCAAGTGCGTTAAAACCAGACCGCGGCCCCCTTTGGCGGGGGTGCTGCAACCAGTATAAAGAGGGAG
GTAGCTACACAGGGAGGGGGAGGTTTGGACCTTGCATTCCTACGCAGCCATGCCCCAAACCAATACCATAGATGCCATCA
TCATCACCACCAGTGGTGAGTATAGTGCGGGTGACACTGATCACGATAAGCACACGTACTATACGTATATACGGTTATAT
ATAAATACATAGGCACATCTGCGAATAAATGTACTCGATCGCTCTCCCTCTCCTGGATAATACTCCCTCTATCCCAGAAT
ATAGCAACCTAAGCCATCCTAGGTTGCTATATTCTAGGACGGAGGGAGTATATCCCTCCGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis