Browse Element(s) Details


Os.55898.1.S1_at

Description gb:AK108959.1
DB_XREF= gi:32994168
TID=Os.55898.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-D01, full insert sequence.
FL= gb:AK108959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1169011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11650NANA12+6316318..6320934retrotransposon protein, putative, unclassified
LOC_Os12g11660Os.51554.1.S1_at10/1112+6323887..6324535expressed protein
LOC_Os12g11670Os.40360.1.S1_x_at1/1112+6330437..6333049hypothetical protein
LOC_Os12g11680OsAffx.31705.2.S1_at11/1112+6339847..6342846Leucine Rich Repeat family protein
LOC_Os12g11690OsAffx.7559.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.55898.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.51765.1.S1_at9/1112+6343486..6346006expressed protein
LOC_Os12g11700OsAffx.31706.1.S1_at11/1112+6347630..6348766hypothetical protein
LOC_Os12g11710Os.55244.1.S1_at11/1112+6353046..6353637expressed protein
LOC_Os12g11720OsAffx.31705.2.S1_at4/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11720OsAffx.27330.1.S1_s_at1/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11730NANA12+6361141..6364552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g11740Os.47130.4.A1_x_at1/1112+6369541..6369867retrotransposon protein, putative, unclassified
LOC_Os12g11750OsAffx.29342.1.S1_at1/1112+6370994..6373413retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55898.1.S1_at--315--411Chr12:6345801..6345825 (25 bp)
ATCAGTTCATCATCCTATTCGCATT
LOC_Os12g11690
Os.55898.1.S1_at--943--10671Chr12:6345778..6345802 (25 bp)
TTCCTTCTCTCCTTTGTTTTCTGTA
LOC_Os12g11690
Os.55898.1.S1_at--1159--4212Chr12:6345739..6345763 (25 bp)
CCGCTTCCTCGTATGCAACTAGAAA
LOC_Os12g11690
Os.55898.1.S1_at--42--1471Chr12:6345691..6345715 (25 bp)
AGAAGTTCGCCAATACCAAACCTGC
LOC_Os12g11690
Os.55898.1.S1_at--851--751Chr12:6345652..6345676 (25 bp)
ATGTAATGCAGTCTGCGCCACTGAT
LOC_Os12g11690
Os.55898.1.S1_at--219--1251Chr12:6345555..6345579 (25 bp)
AGTTGATGTCAGTTGTTTCTTCCCT
LOC_Os12g11690
Os.55898.1.S1_at--248--5111Chr12:6345500..6345524 (25 bp)
GAAGGCTGTTCCCTGAAGTTTTCTA
LOC_Os12g11690
Os.55898.1.S1_at--715--6031Chr12:6345454..6345478 (25 bp)
GAGATGTTCTTTGAGCTGCTTTTAG
LOC_Os12g11690
Os.55898.1.S1_at--960--1311Chr12:6345431..6345455 (25 bp)
AGAGGTGCTTTTGCTTAGTTTCGTT
LOC_Os12g11690
Os.55898.1.S1_at--361--10051Chr12:6345416..6345440 (25 bp)
TAGTTTCGTTTTGTCTCCTGTTGTC
LOC_Os12g11690
Os.55898.1.S1_at--926--7691Chr12:6345379..6345403 (25 bp)
GGGTCTCAAACCTTGTGTTAGTCTG
LOC_Os12g11690
Target Sequence 
ATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTTGTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAA
CTAGAAATCTCTGTAATTAATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGCAG
TCTGCGCCACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAGAGCTGAAAAGTTCGACAATATGT
CTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACGGCCAAGATCTGGCGTAGGATAACTGAAGGCTGTTCCCTGAAGT
TTTCTATGGATGTTTGTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTTTTGTC
TCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis