Browse Element(s) Details


Os.55244.1.S1_at

Description gb:AK107720.1
DB_XREF= gi:32992929
TID=Os.55244.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E08, full insert sequence.
FL= gb:AK107720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1171011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11670Os.40360.1.S1_x_at1/1112+6330437..6333049hypothetical protein
LOC_Os12g11680OsAffx.31705.2.S1_at11/1112+6339847..6342846Leucine Rich Repeat family protein
LOC_Os12g11690OsAffx.7559.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.55898.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.51765.1.S1_at9/1112+6343486..6346006expressed protein
LOC_Os12g11700OsAffx.31706.1.S1_at11/1112+6347630..6348766hypothetical protein
LOC_Os12g11710Os.55244.1.S1_at11/1112+6353046..6353637expressed protein
LOC_Os12g11720OsAffx.31705.2.S1_at4/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11720OsAffx.27330.1.S1_s_at1/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11730NANA12+6361141..6364552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g11740Os.47130.4.A1_x_at1/1112+6369541..6369867retrotransposon protein, putative, unclassified
LOC_Os12g11750OsAffx.29342.1.S1_at1/1112+6370994..6373413retrotransposon protein, putative, unclassified
LOC_Os12g11760NANA12+6373527..6379257retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55244.1.S1_at--1155--8591Chr12:6353077..6353101 (25 bp)
TGTGATTTCGGGAACGTACGACGCC
LOC_Os12g11710
Os.55244.1.S1_at--418--4751Chr12:6353311..6353335 (25 bp)
GCTGATCATGGCAAGAAGCTCCTGC
LOC_Os12g11710
Os.55244.1.S1_at--487--3351Chr12:6353335..6353359 (25 bp)
CACGACCACGGCGAAAGTGCAACTA
LOC_Os12g11710
Os.55244.1.S1_at--260--3131Chr12:6353362..6353386 (25 bp)
AATTCTTACGATGTCGTCCCATTTC
LOC_Os12g11710
Os.55244.1.S1_at--312--191Chr12:6353382..6353406 (25 bp)
ATTTCAACCGCACTGCTGCAGCAAC
LOC_Os12g11710
Os.55244.1.S1_at--84--2651Chr12:6353404..6353428 (25 bp)
AACCACGACTTACCAGGTCAACTGC
LOC_Os12g11710
Os.55244.1.S1_at--889--9871Chr12:6353440..6353464 (25 bp)
TACAGGGTTCTGTGCGGCAATCATC
LOC_Os12g11710
Os.55244.1.S1_at--1021--8691Chr12:6353450..6353474 (25 bp)
TGTGCGGCAATCATCCTGGGCCATG
LOC_Os12g11710
Os.55244.1.S1_at--172--8131Chr12:6353496..6353520 (25 bp)
GGACATTCGCTTTTAATTCTCGATT
LOC_Os12g11710
Os.55244.1.S1_at--322--6911Chr12:6353536..6353560 (25 bp)
GTATCGTGTTCACCTTGTTTCACTA
LOC_Os12g11710
Os.55244.1.S1_at--575--1491Chr12:6353576..6353600 (25 bp)
AGCACAAGCTTTTCAGTTTGCAACT
LOC_Os12g11710
Target Sequence 
TGTGATTTCGGGAACGTACGACGCCGCGCCGGCCGGTGATCGATGGCGGCGGTGCGCGGGGTTGGGCTAGCGTCGTCGCT
CCTCCTCCTCATCATCATCATCGTGTCTGCACCGCACCTCCTCCTCGCATCGCTCCCGCCCCGCGATGCGTCCGCCGCCG
CGTCGGGGTCGACGACGACGGCAGCGGCGGCGGCGACGACGCCCGTAGCGGCGTCAAGCTTTCCTTCAGAAGAAGCTGAT
CATGGCAAGAAGCTCCTGCACGACCACGGCGAAAGTGCAACTAGTAATTCTTACGATGTCGTCCCATTTCAACCGCACTG
CTGCAGCAACCACGACTTACCAGGTCAACTGCGGGCGGTCAAGTACAGGGTTCTGTGCGGCAATCATCCTGGGCCATGCC
CACACCCAAAAACACACAAGGACATTCGCTTTTAATTCTCGATTTCACAACCAAAGTATGTATCGTGTTCACCTTGTTTC
ACTAAAAGGGTGTGTAGCTAGCACAAGCTTTTCAGTTTGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis