Browse Element(s) Details


OsAffx.7559.1.S1_at

Description tigr:9640.m01112
TID=OsAffx.7559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1169011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11650NANA12+6316318..6320934retrotransposon protein, putative, unclassified
LOC_Os12g11660Os.51554.1.S1_at10/1112+6323887..6324535expressed protein
LOC_Os12g11670Os.40360.1.S1_x_at1/1112+6330437..6333049hypothetical protein
LOC_Os12g11680OsAffx.31705.2.S1_at11/1112+6339847..6342846Leucine Rich Repeat family protein
LOC_Os12g11690OsAffx.7559.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.55898.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.51765.1.S1_at9/1112+6343486..6346006expressed protein
LOC_Os12g11700OsAffx.31706.1.S1_at11/1112+6347630..6348766hypothetical protein
LOC_Os12g11710Os.55244.1.S1_at11/1112+6353046..6353637expressed protein
LOC_Os12g11720OsAffx.31705.2.S1_at4/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11720OsAffx.27330.1.S1_s_at1/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11730NANA12+6361141..6364552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g11740Os.47130.4.A1_x_at1/1112+6369541..6369867retrotransposon protein, putative, unclassified
LOC_Os12g11750OsAffx.29342.1.S1_at1/1112+6370994..6373413retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7559.1.S1_at--875--8931Chr12:6345070..6345094 (25 bp)
TGACCCTTCTCCACCAAATATTTTT
LOC_Os12g11690
OsAffx.7559.1.S1_at--932--1451Chr12:6345036..6345060 (25 bp)
AGAATCATTGTTCCAGTCCTAACCA
LOC_Os12g11690
OsAffx.7559.1.S1_at--637--8691Chr12:6344994..6345018 (25 bp)
TGTGCTCCAAGCCTAAAACGTGTGA
LOC_Os12g11690
OsAffx.7559.1.S1_at--988--7671Chr12:6344968..6344992 (25 bp)
GGGTATTCTGCCGAACCTAATGAAC
LOC_Os12g11690
OsAffx.7559.1.S1_at--381--5493Chr12:6366048..6366072 (25 bp)
GAACATATCTGCTCCAGCTACTGTA
NONE
OsAffx.7559.1.S1_at--658--6091Chr12:6344863..6344887 (25 bp)
GAGTCTTTGCTCTTGGGAACCTGAA
LOC_Os12g11690
OsAffx.7559.1.S1_at--1148--8971Chr12:6344842..6344866 (25 bp)
TGAACTCTACAGTCGCATCACAGGG
LOC_Os12g11690
OsAffx.7559.1.S1_at--153--5551Chr12:6344806..6344830 (25 bp)
GAAACTCTCGGTCGCTGATGTGTTA
LOC_Os12g11690
OsAffx.7559.1.S1_at--922--6751Chr12:6344785..6344809 (25 bp)
GTTAGCCAACAACCGATGGATCCGC
LOC_Os12g11690
OsAffx.7559.1.S1_at--495--4791Chr12:6344750..6344774 (25 bp)
GCTCCTTGGGCGTTCAAGCAATTTT
LOC_Os12g11690
OsAffx.7559.1.S1_at--1097--8191Chr12:6344595..6344619 (25 bp)
GGAAGGATTCCATTTCAGCATCTAC
LOC_Os12g11690
Target Sequence 
TGACCCTTCTCCACCAAATATTTTTAGCACACCCAGAATCATTGTTCCAGTCCTAACCAGAAATGGATTGTTTGGATGTG
CTCCAAGCCTAAAACGTGTGAGGGGTATTCTGCCGAACCTAATGAACATATCTGCTCCAGCTACTGTAGCAGTGTGGCTT
GGATTTCCCTATCACCTCAGCTGGCTCAGCATATTTAAACAAGGTTCGAGTCTTTGCTCTTGGGAACCTGAACTCTACAG
TCGCATCACAGGGCGTGTCCACCAGAAACTCTCGGTCGCTGATGTGTTAGCCAACAACCGATGGATCCGCGACCTTCGTG
GCTCCTTGGGCGTTCAAGCAATTTTGCAATACCTGCAGGTGGGAAAACTCGGGGTCGTATTCCACCCGCTCGGCCTAACT
CGCCCTCCTCTCAGGAAGGATTCCATTTCAGCATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis