Browse Element(s) Details


OsAffx.31706.1.S1_at

Description tigr:9640.m01113
TID=OsAffx.31706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1170011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11660Os.51554.1.S1_at10/1112+6323887..6324535expressed protein
LOC_Os12g11670Os.40360.1.S1_x_at1/1112+6330437..6333049hypothetical protein
LOC_Os12g11680OsAffx.31705.2.S1_at11/1112+6339847..6342846Leucine Rich Repeat family protein
LOC_Os12g11690OsAffx.7559.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.55898.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.51765.1.S1_at9/1112+6343486..6346006expressed protein
LOC_Os12g11700OsAffx.31706.1.S1_at11/1112+6347630..6348766hypothetical protein
LOC_Os12g11710Os.55244.1.S1_at11/1112+6353046..6353637expressed protein
LOC_Os12g11720OsAffx.31705.2.S1_at4/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11720OsAffx.27330.1.S1_s_at1/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11730NANA12+6361141..6364552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g11740Os.47130.4.A1_x_at1/1112+6369541..6369867retrotransposon protein, putative, unclassified
LOC_Os12g11750OsAffx.29342.1.S1_at1/1112+6370994..6373413retrotransposon protein, putative, unclassified
LOC_Os12g11760NANA12+6373527..6379257retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31706.1.S1_at--228--8251Chr12:6347676..6347700 (25 bp)
GGCACCGCGACCAAGACTTTGCTCA
LOC_Os12g11700
OsAffx.31706.1.S1_at--670--71Chr12:6347864..6348104 (25 bp)
ATTGCGGGTTTTGTGCGCCATTCAC
LOC_Os12g11700
OsAffx.31706.1.S1_at--1063--1511Chr12:6348205..6348229 (25 bp)
AGCTTACAAGGGTCTCGTCGTCCAT
LOC_Os12g11700
OsAffx.31706.1.S1_at--78--7211Chr12:6348221..6348245 (25 bp)
GTCGTCCATGTGTAGGCTTTGCTCC
LOC_Os12g11700
OsAffx.31706.1.S1_at--1143--4871Chr12:6348236..6348260 (25 bp)
GCTTTGCTCCATTCGGGACGACATA
LOC_Os12g11700
OsAffx.31706.1.S1_at--928--4991Chr12:6348276..6348300 (25 bp)
GCAGGCGTCACGGTTAGCGTCCTAG
LOC_Os12g11700
OsAffx.31706.1.S1_at--397--10451Chr12:6348289..6348313 (25 bp)
TTAGCGTCCTAGTCAGCTGCGTCGG
LOC_Os12g11700
OsAffx.31706.1.S1_at--419--3331Chr12:6348319..6348343 (25 bp)
CACTCTGCGCAGTTCTGGCAGGATG
LOC_Os12g11700
OsAffx.31706.1.S1_at--873--8251Chr12:6348360..6348384 (25 bp)
GGCAGCCAGCATGTCACAGCAGGGT
LOC_Os12g11700
OsAffx.31706.1.S1_at--854--1751Chr12:6348375..6348399 (25 bp)
ACAGCAGGGTCCACCAAACCTTGGA
LOC_Os12g11700
OsAffx.31706.1.S1_at--136--9371Chr12:6348462..6348486 (25 bp)
TCGACTTCCAGGATACCACAGCGGA
LOC_Os12g11700
Target Sequence 
GGCACCGCGACCAAGACTTTGCTCATGCTGTCGTTGAGTGCAACAGGGTCGTCGTTGACGCTTCAACGACGATCCAACAT
TTAGGCACGGGGATTGCGGGTTTTGTGCGCCATTCACCACCCCGCCTTCCACAGCTTACAAGGGTCTCGTCGTCCATGTG
TAGGCTTTGCTCCATTCGGGACGACATAGGCCGCTCACTTCTCGCAGGCGTCACGGTTAGCGTCCTAGTCAGCTGCGTCG
GCCTCGCACTCTGCGCAGTTCTGGCAGGATGCCGGGACTTCGTCACAGGCAGCCAGCATGTCACAGCAGGGTCCACCAAA
CCTTGGACCCTGCCGGGACATCGCCGGAGCACGGGTGGGCTTCCGCCATGCACTTCGACATCAGCGACTTCGACTTCCAG
GATACCACAGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis