Browse Element(s) Details


Os.51565.1.S1_x_at

Description gb:AK063077.1
DB_XREF= gi:32973095
TID=Os.51565.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H10, full insert sequence.
FL= gb:AK063077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1263010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51565.1.S1_x_at--120--4391Chr03:6695564..6695588 (25 bp)
CCAATTCCAGGCAGTTCTAGCAAAA
LOC_Os03g12630
Os.51565.1.S1_x_at--139--1311Chr03:6695628..6695652 (25 bp)
AGATGATCACTCGAGCGAAGCTGGT
LOC_Os03g12630
Os.51565.1.S1_x_at--543--6011Chr03:6695664..6695688 (25 bp)
GAGAGCACCAGATCCGGTCGGCGCA
LOC_Os03g12630
Os.51565.1.S1_x_at--1063--9211NONE
TCCAGGCGGGATCTCAAGGTTGCTC
NONE
Os.51565.1.S1_x_at--384--2911Chr03:6698893..6698917 (25 bp)
AAGGTTGCTCTCTTCTATGCTATCT
LOC_Os03g12630
Os.51565.1.S1_x_at--238--10411Chr03:6698920..6698944 (25 bp)
TTTTGTTTTGTCATGGTGTCCTGCT
LOC_Os03g12630
Os.51565.1.S1_x_at--484--4871Chr03:6698942..6698966 (25 bp)
GCTATGTTGCCCTTTACTTGAGATG
LOC_Os03g12630
Os.51565.1.S1_x_at--1033--8571Chr03:6698965..6698989 (25 bp)
TGGTTCAGACTTTCAGCCATCTTTG
LOC_Os03g12630
Os.51565.1.S1_x_at--331--4431Chr03:6698980..6699004 (25 bp)
GCCATCTTTGTAGTTTTCGGAATTC
LOC_Os03g12630
Os.51565.1.S1_x_at--5--5211Chr03:6698999..6699023 (25 bp)
GAATTCTCCTTCCAGTAGGTCTCAA
LOC_Os03g12630
Os.51565.1.S1_x_at--916--6051Chr03:6699063..6699087 (25 bp)
GAGATTGTTGTTACCTTTGTCCATG
LOC_Os03g12630
Target Sequence 
CCAATTCCAGGCAGTTCTAGCAAAAAGGTGCCTCGGATGAATCGGGGGCTCCAGTAGGGAGAGGAGATGATCACTCGAGC
GAAGCTGGTGGAGCAGCTGAGAGAGCACCAGATCCGGTCGGCGCAGTCCTACTCCGCCGCCCTCGCCGTCTTCTCGCCCA
GCCCTCACATCGCCTCCAGGCGGGATCTCAAGGTTGCTCTCTTCTATGCTATCTTGTTTTGTTTTGTCATGGTGTCCTGC
TATGTTGCCCTTTACTTGAGATGGTTCAGACTTTCAGCCATCTTTGTAGTTTTCGGAATTCTCCTTCCAGTAGGTCTCAA
AATATCTAGGCATAGAAGGCTGAAGAGGAAAAGAGAAAGGAGATTGTTGTTACCTTTGTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51565.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis