Browse Element(s) Details


Os.51581.1.S1_at

Description gb:AK063107.1
DB_XREF= gi:32973125
TID=Os.51581.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D03, full insert sequence.
FL= gb:AK063107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2559011/11expressed protein
LOC_Os06g071601/11metaxin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25570OsAffx.12190.1.S1_at9/112+14931413..14933136hypothetical protein
LOC_Os02g25580Os.10400.1.S1_at11/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25580OsAffx.32230.1.A1_x_at2/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25590Os.55505.1.S1_x_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.55505.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.51581.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25600Os.45422.1.S1_x_at2/112+14958171..14959659hypothetical protein
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51581.1.S1_at--652--3131Chr02:14956723..14956747 (25 bp)
AATTTTGAGGATTCTCGGCGTGGGA
LOC_Os02g25590
Os.51581.1.S1_at--38--7672Chr02:14956632..14956656 (25 bp)
GGGATTTCGCGCTACGGTTTCGACG
LOC_Os02g25590
Os.51581.1.S1_at--690--193Chr06:3431721..3432135 (25 bp)
ATTTCGCGAGGTTTTGCGTCGCTCA
LOC_Os06g07160
Os.51581.1.S1_at--908--10331Chr02:14956496..14956520 (25 bp)
TTTAGGTGCGGGTCCAAGTGACACG
LOC_Os02g25590
Os.51581.1.S1_at--232--2453Chr02:14607104..14607410 (25 bp)
AAAATCCAACGTGGCGCGACGAGGT
NONE
Os.51581.1.S1_at--175--3372Chr02:14956428..14956452 (25 bp)
CACCGCACTGTGAGAGACCTGAGAG
LOC_Os02g25590
Os.51581.1.S1_at--456--9451Chr02:14956394..14956418 (25 bp)
TCGGCTTCACTCAACTATAACCAAT
LOC_Os02g25590
Os.51581.1.S1_at--824--9791Chr02:14956379..14956403 (25 bp)
TATAACCAATGACCGGTGGGTACCA
LOC_Os02g25590
Os.51581.1.S1_at--305--7571Chr02:14956351..14956375 (25 bp)
GGGCCCCACATGTCACATAGATACG
LOC_Os02g25590
Os.51581.1.S1_at--179--9171Chr02:14956297..14956321 (25 bp)
TGCCCCTTTTCTTAGCATGGAAGTC
LOC_Os02g25590
Os.51581.1.S1_at--261--7031Chr02:14956272..14956296 (25 bp)
GTACAGGTCAAGTCCAACGAAGCAC
LOC_Os02g25590
Target Sequence 
AATTTTGAGGATTCTCGGCGTGGGAGCAGAGGAATTGGTGGCGGGAGAGGGAAATCGGTGCGGCGGGAGTGGGTTTTGGG
AGGGCAAATCGGGGATTTCGCGCTACGGTTTCGACGCGAGGGCGAGGCTACGCCGCCCACAGCGCGCGCGACCCGGGTCT
TCTCCTCGCTGCGCGCCCTGGATTTCGCGAGGTTTTGCGTCGCTCACCTAGGGGACGAGGAACCTAGTTTAGGTGCGGGT
CCAAGTGACACGGCGGCAAAAATCCAACGTGGCGCGACGAGGTCCCGGTCCAGCTCACCGCACTGTGAGAGACCTGAGAG
CGAGTGGCGTCGGCTTCACTCAACTATAACCAATGACCGGTGGGTACCAAGTGGGCCCCACATGTCACATAGATACGAAT
AAAGGTTGCAGAGCAACCGCACCGCCTGCCCCTTTTCTTAGCATGGAAGTCGTACAGGTCAAGTCCAACGAAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis