Browse Element(s) Details


Os.51582.1.S2_at

Description gb:AK073702.1
DB_XREF= gi:32983725
TID=Os.51582.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055D08, full insert sequence.
FL= gb:AK063109.1 gb:AK073702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1975011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51582.1.S2_at--451--5131Chr09:11818114..11818138 (25 bp)
GCAAACAAGCAGTGAAAGCTACCAG
LOC_Os09g19750
Os.51582.1.S2_at--115--9471Chr09:11817842..11817866 (25 bp)
TCTGGCTAGAGATGACGCGAGGCTG
LOC_Os09g19750
Os.51582.1.S2_at--633--8611Chr09:11817783..11817807 (25 bp)
TGGTGCTGCTGTTCTATGGCCTGGC
LOC_Os09g19750
Os.51582.1.S2_at--522--8791Chr09:11817774..11817798 (25 bp)
TGTTCTATGGCCTGGCCGTGCCTGT
LOC_Os09g19750
Os.51582.1.S2_at--29--8431Chr09:11817761..11817785 (25 bp)
GGCCGTGCCTGTCCAACAGAAGAGA
LOC_Os09g19750
Os.51582.1.S2_at--1004--2751Chr09:11817742..11817766 (25 bp)
AAGAGAGACTAAGGTGAGGCTTCAG
LOC_Os09g19750
Os.51582.1.S2_at--694--5191Chr09:11817718..11817742 (25 bp)
GCAATCAGTCCTCAAGCATGAACCT
LOC_Os09g19750
Os.51582.1.S2_at--872--3191Chr09:11817706..11817730 (25 bp)
CAAGCATGAACCTGCCTTGTTTTTT
LOC_Os09g19750
Os.51582.1.S2_at--124--10291Chr09:11817674..11817698 (25 bp)
TTTGCTGGTTTGGTTTTCTTGCATG
LOC_Os09g19750
Os.51582.1.S2_at--682--10551Chr09:11817659..11817683 (25 bp)
TTCTTGCATGGTTTGATCTTGGTAT
LOC_Os09g19750
Os.51582.1.S2_at--656--10251Chr09:11817648..11817672 (25 bp)
TTTGATCTTGGTATTGAACTATGGA
LOC_Os09g19750
Target Sequence 
GCAAACAAGCAGTGAAAGCTACCAGTCTACCACTCACTCAGGGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTT
GTCCAGAGCCCAGAGAAAAGGGATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGANCAACTCTACCAGAA
GAGCCTCTGCTTCTTCTTCTTCTTCCTCTGCCGCAGCCGATGGCGATGGATCGCCATGGCTGCGGCTGACGGCCTTCGCC
GTGCTCACCCTCCACTCGGCTTTCTCTGCATATCTGGCTAGAGATGACGCGAGGCTGGTCGCCCTCGTCGTCGTCGGCTA
CCTCCTGATGCTGGTGCTGCTGTTCTATGGCCTGGCCGTGCCTGTCCAACAGAAGAGAGACTAAGGTGAGGCTTCAGCAA
TCAGTCCTCAAGCATGAACCTGCCTTGTTTTTTTNTCCTTTTTGCTGGTTTGGTTTTCTTGCATGGTTTGATCTTGGTAT
TGAACTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51582.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis