Browse Element(s) Details


Os.51599.1.S1_at

Description gb:AK068512.1
DB_XREF= gi:32978530
TID=Os.51599.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152F03, full insert sequence.
FL= gb:AK068512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1982011/11aminopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed
LOC_Os09g19800NANA9+11852027..11856936Puromycin-sensitive aminopeptidase, putative
LOC_Os09g19810Os.53813.1.S1_at1/119+11857270..11859996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19820Os.51599.1.S1_at11/119+11861273..11865370aminopeptidase, putative, expressed
LOC_Os09g19830Os.52449.1.S1_at11/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19830Os.35502.1.A1_at10/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19840OsAffx.29929.1.S1_at11/119+11878033..11878467hypothetical protein
LOC_Os09g19850Os.35754.1.S1_at11/119+11879514..11884068CRS1/YhbY domain containing protein, expressed
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0005886cellular_componentplasma membrane
GO:0009983molecular_functiontyrosine aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51599.1.S1_at--1018--3391Chr09:11864707..11864731 (25 bp)
CAGCAAGCGCAATCTTATCGGATTA
LOC_Os09g19820
Os.51599.1.S1_at--809--8731Chr09:11864744..11864852 (25 bp)
TGTCACATTGTTCACCTCTAAAGAG
LOC_Os09g19820
Os.51599.1.S1_at--45--3431Chr09:11864919..11864943 (25 bp)
CAGAGCCTGGAGAATGTGCGGATCA
LOC_Os09g19820
Os.51599.1.S1_at--451--4831Chr09:11864985..11865009 (25 bp)
GCTCAGACTGTGCATGATCTTCTCA
LOC_Os09g19820
Os.51599.1.S1_at--735--211Chr09:11865020..11865044 (25 bp)
ATTTGATGCCTCCAGAATTTGATGC
LOC_Os09g19820
Os.51599.1.S1_at--380--9131Chr09:11865048..11865072 (25 bp)
TGCTGTGATGCCAACTTTCGCCAAA
LOC_Os09g19820
Os.51599.1.S1_at--1125--4951Chr09:11865073..11865097 (25 bp)
GCATACATTGTCATAGCAGCTCATT
LOC_Os09g19820
Os.51599.1.S1_at--1086--8031Chr09:11865114..11865138 (25 bp)
GGAGTATGCCGTCAGCTTGAGTTCA
LOC_Os09g19820
Os.51599.1.S1_at--202--3151Chr09:11865142..11865166 (25 bp)
AATTCCTCCTGGATGCAAGGTTTTC
LOC_Os09g19820
Os.51599.1.S1_at--548--10451Chr09:11865209..11865233 (25 bp)
TTAGTATCCCACATGCTTCTTTTTT
LOC_Os09g19820
Os.51599.1.S1_at--247--751Chr09:11865321..11865345 (25 bp)
ATGTATTGTCAATCTCTCGTATGTA
LOC_Os09g19820
Target Sequence 
CAGCAAGCGCAATCTTATCGGATTATGTCAAATCTATTGTCACATTGTTCACCTCTAAAGAGAAGGAAGCAGAGATCTCC
CAGTTCTTCGCAACCCGCACTAAGCCCGGGTTTAAGAGGGCACTAAAGCAGAGCCTGGAGAATGTGCGGATCAGCGCAAG
GTGGGTTGATGGCATCAGGGGTGAAGCTGAGCTTGCTCAGACTGTGCATGATCTTCTCATCAAACTCTGATTTGATGCCT
CCAGAATTTGATGCATTTGCTGTGATGCCAACTTTCGCCAAAGCATACATTGTCATAGCAGCTCATTGTGAGAAAAACAT
GTAGGAGTATGCCGTCAGCTTGAGTTCAAATAATTCCTCCTGGATGCAAGGTTTTCTTACCATTTATTCTTTATCAATAA
TGGATGCTAAGTCTTTCCTTAGTATCCCACATGCTTCTTTTTTTTTTTTGAGAAAATCCCACATGCTTCTTTCAACATAG
CAGCTCATTGTTGCCCTGTTTATGAAGTCATAATTCAAGAAGTGTCGTTATGTATTGTCAATCTCTCGTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis