Browse Element(s) Details


Os.5166.1.S1_at

Description gb:AK103057.1
DB_XREF= gi:32988266
TID=Os.5166.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117K03, full insert sequence.
FL= gb:AK103057.1 gb:AK105408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3205011/11Chaperone protein dnaJ 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32010Os.27027.1.S1_at11/119+19103614..19108508ternary complex factor MIP1, putative, expressed
LOC_Os09g32020Os.2319.1.S1_at11/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32020Os.2319.1.S2_at7/119+19114579..19117606ubiquitin fusion degradation protein, putative, expressed
LOC_Os09g32030Os.17721.1.S1_at11/119+19118866..19120797Iojap protein, putative, expressed
LOC_Os09g32040Os.17567.2.S1_a_at11/119+19121545..19124609No apical meristem protein, expressed
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5166.1.S1_at--243--811Chr09:19126116..19126140 (25 bp)
ATGGTAGTTCTCCTGATTCATCACC
LOC_Os09g32050
Os.5166.1.S1_at--490--8711Chr09:19126089..19126113 (25 bp)
TGTCCCCAAGGGAGCATCCATATGA
LOC_Os09g32050
Os.5166.1.S1_at--402--251Chr09:19126070..19126094 (25 bp)
ATATGATCCAAACCCACCGTATTAC
LOC_Os09g32050
Os.5166.1.S1_at--453--4731Chr09:19125414..19125438 (25 bp)
TCAATTCGTCGGAGGTTACCCTTCA
LOC_Os09g32050
Os.5166.1.S1_at--810--4671Chr09:19125316..19125340 (25 bp)
GCGGTAGTAGCTTTGGTTCCAGAAA
LOC_Os09g32050
Os.5166.1.S1_at--858--7031Chr09:19125278..19125302 (25 bp)
GTACAATATTTTTCTTCCTCCTGGT
LOC_Os09g32050
Os.5166.1.S1_at--1113--9251Chr09:19125263..19125287 (25 bp)
TCCTCCTGGTAGATGGTTGGTCACA
LOC_Os09g32050
Os.5166.1.S1_at--761--7191Chr09:19125212..19125236 (25 bp)
GTCGTAGTAGAGTGCTGGTTGTCCT
LOC_Os09g32050
Os.5166.1.S1_at--615--10391Chr09:19125168..19125192 (25 bp)
TTTTCCCTTCAGTTTCAGTTGTGTT
LOC_Os09g32050
Os.5166.1.S1_at--767--7411Chr09:19125119..19125143 (25 bp)
GTGTTGTGCAAATAGCGCTGCTGTT
LOC_Os09g32050
Os.5166.1.S1_at--1103--4731Chr09:19125077..19125101 (25 bp)
GCTGAGGCGGCAACAGATCGGCATT
LOC_Os09g32050
Target Sequence 
ATGGTAGTTCTCCTGATTCATCACCAATGTCCCCAAGGGAGCATCCATATGATCCAAACCCACCGTATTACCAGAGCCCG
TATGTGGAGGCCCCTCAATTCGTCGGAGGTTACCCTTCACTCAACTTTCCAATGCCAACCGCTCCCCCCGGTGCACAGAG
GGATCCAATCCCATGATCTATATGGGACGGACGCGGTAGTAGCTTTGGTTCCAGAAAGGGTCATCATTTTGTACAATATT
TTTCTTCCTCCTGGTAGATGGTTGGTCACATTGGTCAAGATGATTTGTGCTTATTAGTCGTAGTAGAGTGCTGGTTGTCC
TACTCCTCTGCATGCTTTTTTTTTTCCCTTCAGTTTCAGTTGTGTTTGTGTCGTGTACAGGCAGGTGCGCGTGTTGTGCA
AATAGCGCTGCTGTTAAATCTGTAATGCTGTTGCTGAGGCGGCAACAGATCGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis