Browse Element(s) Details


Os.51673.1.S1_at

Description gb:AK103640.1
DB_XREF= gi:32988849
TID=Os.51673.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033134I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033134I01, full insert sequence.
FL= gb:AK063351.1 gb:AK103640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5282011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed
LOC_Os02g52820Os.51673.1.S1_at11/112+32289451..32292822expressed protein
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51673.1.S1_at--614--6231Chr02:32292637..32292661 (25 bp)
GATGGCTCTTACGTGAGTCACTGCT
LOC_Os02g52820
Os.51673.1.S1_at--1151--9551Chr02:32292643..32292667 (25 bp)
TCTTACGTGAGTCACTGCTTCACAA
LOC_Os02g52820
Os.51673.1.S1_at--545--2231Chr02:32292664..32292688 (25 bp)
ACAATCTTGTAGTTTGGGATGTAAC
LOC_Os02g52820
Os.51673.1.S1_at--487--6251Chr02:32292697..32292721 (25 bp)
GATGGTAGATCCTTATAGATGGAGG
LOC_Os02g52820
Os.51673.1.S1_at--916--6231Chr02:32292714..32292738 (25 bp)
GATGGAGGAAATGTACTTTGGCTGA
LOC_Os02g52820
Os.51673.1.S1_at--1000--2031Chr02:32292728..32292752 (25 bp)
ACTTTGGCTGATGAGTTTTTGCTTC
LOC_Os02g52820
Os.51673.1.S1_at--296--8491Chr02:32292732..32292756 (25 bp)
TGGCTGATGAGTTTTTGCTTCATTG
LOC_Os02g52820
Os.51673.1.S1_at--220--10732Chr09:13621997..13622119 (24 bp)
TTGCTTCATTGCACATGTCATTCTG
NONE
Os.51673.1.S1_at--31--9031Chr02:32292755..32292779 (25 bp)
TGCACATGTCATTCTGTGACGTGCT
LOC_Os02g52820
Os.51673.1.S1_at--941--7131Chr02:32292762..32292786 (25 bp)
GTCATTCTGTGACGTGCTACATTAT
LOC_Os02g52820
Os.51673.1.S1_at--22--5771Chr02:32292772..32292796 (25 bp)
GACGTGCTACATTATTAGTTGATGA
LOC_Os02g52820
Target Sequence 
GATGGCTCTTACGTGAGTCACTGCTTCACAATCTTGTAGTTTGGGATGTAACAAAATTTGGATGGTAGATCCTTATAGAT
GGAGGAAATGTACTTTGGCTGATGAGTTTTTGCTTCATTGCACATGTCATTCTGTGACGTGCTACATTATTAGTTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51673.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis