Browse Element(s) Details


Os.5169.1.S1_at

Description gb:AU173949
DB_XREF= gi:13165152
DB_XREF=AU173949
CLONE=S21335
TID=Os.5169.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5169 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3932011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5169.1.S1_at--184--8011Chr12:24158491..24158515 (25 bp)
GGATGGCTCCAACAAGTGAGCTATT
LOC_Os12g39320
Os.5169.1.S1_at--112--10211Chr12:24158512..24158536 (25 bp)
TATTTCGAGCTTCCTGATGCCTAAT
LOC_Os12g39320
Os.5169.1.S1_at--539--6351Chr12:24158527..24158551 (25 bp)
GATGCCTAATTTTTGTTCGCGGATT
LOC_Os12g39320
Os.5169.1.S1_at--945--7871Chr12:24158567..24158591 (25 bp)
GGTTTTGTGTGATTGTTAGTGCTTC
LOC_Os12g39320
Os.5169.1.S1_at--743--6771Chr12:24158581..24158605 (25 bp)
GTTAGTGCTTCAAGGTGGATACAAT
LOC_Os12g39320
Os.5169.1.S1_at--1119--91Chr12:24158645..24158669 (25 bp)
ATTCTCGTTTTCGTATTAGGAGGAT
LOC_Os12g39320
Os.5169.1.S1_at--651--1191Chr12:24158699..24158723 (25 bp)
AGTATTTTGTTTATGCTAGTGGCTA
LOC_Os12g39320
Os.5169.1.S1_at--166--6291Chr12:24158728..24158752 (25 bp)
GATGTTCAGAGTATGCTTCACTGCA
LOC_Os12g39320
Os.5169.1.S1_at--966--10511Chr12:24158744..24158768 (25 bp)
TTCACTGCACAGTTTTAGCTTAGGA
LOC_Os12g39320
Os.5169.1.S1_at--985--1551Chr12:24158760..24158784 (25 bp)
AGCTTAGGATTGCTCAGTTTGGTGA
LOC_Os12g39320
Os.5169.1.S1_at--548--7751Chr12:24158780..24158804 (25 bp)
GGTGAGCACTTTGATGGTTTTCTTT
LOC_Os12g39320
Target Sequence 
GGATGGCTCCAACAAGTGAGCTATTTCGAGCTTCCTGATGCCTAATTTTTGTTCGCGGATTTAGGGGGTTTTAGTGGGTT
TTGTGTGATTGTTAGTGCTTCAAGGTGGATACAATTGTTTAATAATAATAAATTACGTGCCAGTTATAGATTAAATTCTC
GTTTTCGTATTAGGAGGATGAATCTCTTGGATTGTTTTAATGAGGTTGAGTATTTTGTTTATGCTAGTGGCTATTGAGAT
GTTCAGAGTATGCTTCACTGCACAGTTTTAGCTTAGGATTGCTCAGTTTGGTGAGCACTTTGATGGTTTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis